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Protein Overview: rhp55

General Information:
Name(s) found: rhp55 / SPAC3C7.03c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • RecA family ATPase Rhp55 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 350 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][TASLink to PubMed article]
    Rhp55-Rhp57 complex [NAS]
    cytosol [IDALink to PubMed article]
    Biological Process: meiotic joint molecule formation [TASLink to PubMed article]
    reciprocal meiotic recombination [IMPLink to PubMed article]
    recombinational repair [IMPLink to PubMed article]
    double-strand break repair via homologous recombination [IGILink to PubMed article]
    meiotic gene conversion [IMPLink to PubMed article]
    response to DNA damage stimulus [IMPLink to PubMed article]
    DNA recombinase assembly [NAS]
    nucleus organization [IMPLink to PubMed article]
    strand invasion [TASLink to PubMed article]
    Molecular Function: ATP binding [ISSLink to PubMed article]
    DNA binding [IEA]
    DNA-dependent ATPase activity [ISSLink to PubMed article]
    protein-DNA loading ATPase activity [TASLink to PubMed article]
    protein heterodimerization activity [IPILink to PubMed article]
    single-stranded DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSQHRLVT QPAIRAYEAF SAPGFGFNSK LLDDAFGGSG LKRGYISEVC GAPGMGKTSL  60
   61 ALQITANALL SGSRVIWVET CQPIPMERLR QLLDNHVPSS QDEEEKCDTD ELLNLLDVVY 120
  121 APNLVNILAF LRNFDQEKHL KEIGLLIIDN LSMPIQLAYP TSPEDYAYLR LRRNTSKKSS 180
  181 LSDSSQKENT LTLNKENEFS SKDDSNFAFH NSSTKTTINR RKKAIGTISS LLSKITSSCY 240
  241 VAIFVTTQMT SKVVSGIGAK LIPLLSTNWL DNLSYRLILY SRHSTEESKD GQSRPSHQLL 300
  301 RYAFMAKQPP AHSAESELAF QLTSTGIQDY QSIPTNSSQR RKRSILECES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..258] PSI-BLAST 50.39794 RecA
    2 View Details [259..350] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.4974940028864 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • helicase activity
    		•  1.70242731830224 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.56989255954747 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.2539059700735 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2155186842031 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • microtubule motor activity
    		•  1.170087579765 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  1.117585097627 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.08697924060619 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.72881469450553 bayes_pls_golite062009
  • DNA binding
    		•  0.702147676354075 bayes_pls_golite062009
  • motor activity
    		•  0.677658554107 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.5886142102548 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.568457189190858 bayes_pls_golite062009
  • protein binding
    		•  0.378225828131122 bayes_pls_golite062009
  • RNA helicase activity
    		•  0.34746349346164 bayes_pls_golite062009
  • mismatched DNA binding
    		•  0.31144582840038 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  0.30832907234141 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  0.29532978396745 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.287777990975748 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.26252931460003 bayes_pls_golite062009
  • exodeoxyribonuclease V activity
    		•  0.185603938981231 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle