Protein Overview: csn71

General Information:
Name(s) found:	csn71 / SPAC1952.12c [Sanger Pombe]
Description(s) found: Found 21 descriptions. SHOW ALL	COP9/signalosome complex subunit 7a [Sanger Pombe]
Organism:	Schizosaccharomyces pombe
Length:	205 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytosol [IDA] signalosome [NAS]
Biological Process:	regulation of proteasomal ubiquitin-dependent protein catabolic process [NAS] cell cycle [RCA] cullin deneddylation [NAS]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKISQAID DPNVFCFQEL WIECQEVQKS QPIDSAVLRT LEIFCRGDIR DASSEWNELR  60
   61 FKKLRLLTLI DLANRHVGSS VSFETILVHL QLDRLPPSDP TFTVEYYIMQ AMMNQILVGK 120
  121 INAKTQTLHV SWALERFLDS KRIDEMKYSL DRFIERCSNI LFQLDAGTPS VSKSFKRASR 180
  181 MSSSDGIDYM VFDKRPRPDD TDFDL

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..205]	FFAS03	1.35	Solution structure of the PCI domain

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
transcription regulator activity	4.44650475502011	bayes_pls_golite062009
DNA binding	4.14600429789206	bayes_pls_golite062009
nucleic acid binding	4.04917149323679	bayes_pls_golite062009
transcription factor activity	3.4813422326469	bayes_pls_golite062009
binding	3.37660003833383	bayes_pls_golite062009
sequence-specific DNA binding	1.96682762098646	bayes_pls_golite062009
transcription activator activity	1.81076806553342	bayes_pls_golite062009
transcription repressor activity	1.68338035958948	bayes_pls_golite062009
small conjugating protein ligase activity	1.28416365596732	bayes_pls_golite062009
ubiquitin-protein ligase activity	1.12766532785895	bayes_pls_golite062009
RNA polymerase II transcription factor activity	1.04169645404432	bayes_pls_golite062009
acid-amino acid ligase activity	0.761838897494019	bayes_pls_golite062009
protein binding	0.726445167461826	bayes_pls_golite062009
transcription factor binding	0.507503949885045	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.49516964123412	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.281229260644949	bayes_pls_golite062009
hydrolase activity	0.20695163916851	bayes_pls_golite062009
transferase activity	0.10058871838551	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.98

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle