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Protein Overview: CG5728-PA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..164] FFAS03 3.68 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
2 View Details [165..429] PSI-BLAST 16.154902 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 1 and 4; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6; Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
3 View Details [430..503] PSI-BLAST 25.30103 No description for 2oceA was found.
4 View Details [504..686] PSI-BLAST 6.522879 Archaeal exosome core
5 View Details [687..849] PSI-BLAST 4.69897 C-terminal domain of RNA polymerase II subunit RBP4 (RpoE); N-terminal, heterodimerisation domain of RBP4 (RpoE)
6 View Details [850..1334] PSI-BLAST 8.39794 No description for 2ooeA was found.
7 View Details [1335..1430] PSI-BLAST 64.09691 The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • nucleic acid binding
  • 4.09009085606859 bayes_pls_golite062009
  • DNA binding
  • 3.36845392994723 bayes_pls_golite062009
  • binding
  • 2.75191943661749 bayes_pls_golite062009
  • RNA binding
  • 2.27676610881755 bayes_pls_golite062009
  • transcription regulator activity
  • 1.87401014198878 bayes_pls_golite062009
  • structural constituent of ribosome
  • 1.83152266175242 bayes_pls_golite062009
  • 1.76360026808806 bayes_pls_golite062009
  • structural molecule activity
  • 1.64866802884616 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.50253120414939 bayes_pls_golite062009
  • single-stranded DNA binding
  • 1.25554419417176 bayes_pls_golite062009
  • transcription factor activity
  • 1.23001261722207 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 0.96837127754605 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 0.96837127754605 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 0.968246780254221 bayes_pls_golite062009
  • ribonuclease activity
  • 0.889515634362309 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 0.852392118159292 bayes_pls_golite062009
  • exoribonuclease activity
  • 0.807131021663582 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.753061173202428 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.567761713204349 bayes_pls_golite062009
  • mRNA binding
  • 0.358682315244164 bayes_pls_golite062009
  • nuclease activity
  • 0.344602655860014 bayes_pls_golite062009
  • protein binding
  • 0.185497104009134 bayes_pls_golite062009
  • ligase activity
  • 0.134124680390346 bayes_pls_golite062009
    2
    Term Confidence Notes
  • transcription regulator activity
  • 4.09002897694881 bayes_pls_golite062009
  • nucleic acid binding
  • 2.55336640491561 bayes_pls_golite062009
  • RNA binding
  • 2.47373172667773 bayes_pls_golite062009
  • structural constituent of ribosome
  • 2.13956481798878 bayes_pls_golite062009
  • binding
  • 1.9759530321894 bayes_pls_golite062009
  • structural molecule activity
  • 1.95031459523051 bayes_pls_golite062009
  • DNA binding
  • 1.83809666640016 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.81524862921454 bayes_pls_golite062009
  • 1.8053217442628 bayes_pls_golite062009
  • single-stranded DNA binding
  • 1.62996999055328 bayes_pls_golite062009
  • transcription factor activity
  • 1.21526211005888 bayes_pls_golite062009
  • ribonuclease activity
  • 1.19236946227657 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 1.15212468568198 bayes_pls_golite062009
  • exoribonuclease activity
  • 1.10445667068538 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 1.07288786419238 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 1.07285050275461 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 1.07285050275461 bayes_pls_golite062009
  • transcription termination factor activity
  • 1.01993495617192 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.85691075793641 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.83268201349295 bayes_pls_golite062009
  • protein binding
  • 0.523813050066193 bayes_pls_golite062009
  • mRNA binding
  • 0.403794675006504 bayes_pls_golite062009
  • ligase activity
  • 0.148928528645156 bayes_pls_golite062009
  • catalytic activity
  • 0.10089766806364 bayes_pls_golite062009
  • RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • transcription factor binding
  • 0.0560158842173433 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • RNA binding
  • 5.18414740305744 bayes_pls_golite062009
  • nucleic acid binding
  • 4.78650555542715 bayes_pls_golite062009
  • mRNA binding
  • 3.82977088614136 bayes_pls_golite062009
  • binding
  • 3.45962790790935 bayes_pls_golite062009
  • transcription regulator activity
  • 2.28364833275102 bayes_pls_golite062009
  • DNA binding
  • 2.03207983673692 bayes_pls_golite062009
  • structural constituent of ribosome
  • 2.02605441840546 bayes_pls_golite062009
  • 1.86852686252563 bayes_pls_golite062009
  • structural molecule activity
  • 1.81283970647925 bayes_pls_golite062009
  • transcription factor activity
  • 1.30278154718684 bayes_pls_golite062009
  • protein binding
  • 1.16541072642796 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 1.07288786419238 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 1.07285050275461 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 1.07285050275461 bayes_pls_golite062009
  • poly-pyrimidine tract binding
  • 0.63404501189528 bayes_pls_golite062009
  • mRNA 3'-UTR binding
  • 0.489176583045793 bayes_pls_golite062009
  • transcription repressor activity
  • 0.392035003865213 bayes_pls_golite062009
  • transcription activator activity
  • 0.324382863054631 bayes_pls_golite062009
  • structure-specific DNA binding
  • 0.32222928997178 bayes_pls_golite062009
  • transcription factor binding
  • 0.254024117548226 bayes_pls_golite062009
  • ligase activity
  • 0.148928528645156 bayes_pls_golite062009
  • catalytic activity
  • 0.113112541746059 bayes_pls_golite062009
  • single-stranded DNA binding
  • 0.1069917291606 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.0321875054165348 bayes_pls_golite062009
    5
    Term Confidence Notes
  • nucleic acid binding
  • 4.29626483284963 bayes_pls_golite062009
  • DNA binding
  • 3.53568546959418 bayes_pls_golite062009
  • binding
  • 2.83465364476231 bayes_pls_golite062009
  • RNA binding
  • 2.41160981373213 bayes_pls_golite062009
  • structural constituent of ribosome
  • 2.02605441840546 bayes_pls_golite062009
  • transcription regulator activity
  • 1.84350127337404 bayes_pls_golite062009
  • structure-specific DNA binding
  • 1.81524862921454 bayes_pls_golite062009
  • structural molecule activity
  • 1.81283970647925 bayes_pls_golite062009
  • 1.8053217442628 bayes_pls_golite062009
  • single-stranded DNA binding
  • 1.62996999055328 bayes_pls_golite062009
  • transcription factor activity
  • 1.21526211005888 bayes_pls_golite062009
  • ribonuclease activity
  • 1.19236946227657 bayes_pls_golite062009
  • exoribonuclease activity, producing 5'-phosphomonoesters
  • 1.15212468568198 bayes_pls_golite062009
  • exoribonuclease activity
  • 1.10445667068538 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
  • 1.07288786419238 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
  • 1.07285050275461 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
  • 1.07285050275461 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 0.85691075793641 bayes_pls_golite062009
  • 3'-5'-exoribonuclease activity
  • 0.83268201349295 bayes_pls_golite062009
  • nuclease activity
  • 0.57381531077345 bayes_pls_golite062009
  • mRNA binding
  • 0.4162128308402 bayes_pls_golite062009
  • protein binding
  • 0.152645195799531 bayes_pls_golite062009
  • ligase activity
  • 0.148928528645156 bayes_pls_golite062009
  • RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 0.0740938021136293 bayes_pls_golite062009
    6
    Term Confidence Notes
  • binding
  • 2.71974493738804 bayes_pls_golite062009
  • transcription regulator activity
  • 2.10810725340025 bayes_pls_golite062009
  • nucleic acid binding
  • 2.03244296439384 bayes_pls_golite062009
  • DNA binding
  • 1.77671451483154 bayes_pls_golite062009
  • protein binding
  • 1.6279032205159 bayes_pls_golite062009
  • transcription factor activity
  • 1.29089764676338 bayes_pls_golite062009
  • RNA binding
  • 1.1868411700113 bayes_pls_golite062009
  • transcription factor binding
  • 0.498051196281179 bayes_pls_golite062009
  • transcription cofactor activity
  • 0.24203289043804 bayes_pls_golite062009
    7 No functions predicted.




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle