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Protein Overview: TfIIFbeta-PA

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

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[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data


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[View Top Sequence Alignments] [Show Ginzu Version Information]

Domains predicted:

#   Region(s) Method Confidence Match Description
1 View Details [1..137] PSI-BLAST 31.045757 TFIIF beta subunit, Rap30
2 View Details [138..277] PSI-BLAST 26.69897 DNA-BINDING DOMAIN FROM HUMAN RAP30, NMR, MINIMIZED AVERAGE

Functions predicted (by domain):

# Gene Ontology predictions
1
Term Confidence Notes
  • general RNA polymerase II transcription factor activity
  • 10.2797850053222 bayes_pls_golite062009
  • transcription initiation factor activity
  • 6.22439849848084 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 4.06672086326535 bayes_pls_golite062009
  • transcription regulator activity
  • 3.89911747857156 bayes_pls_golite062009
  • binding
  • 2.17316238057078 bayes_pls_golite062009
  • transcription activator activity
  • 2.12958061949296 bayes_pls_golite062009
  • protein binding
  • 1.90482509358938 bayes_pls_golite062009
  • transcription coactivator activity
  • 1.30173573105398 bayes_pls_golite062009
  • transcription factor binding
  • 0.677361513203971 bayes_pls_golite062009
  • transcription cofactor activity
  • 0.43974291826617 bayes_pls_golite062009
  • catalytic activity
  • 0.304516551414824 bayes_pls_golite062009
    2
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
  • 5.67074370996647 bayes_pls_golite062009
  • transcription regulator activity
  • 5.55329976718261 bayes_pls_golite062009
  • DNA binding
  • 5.08959163553491 bayes_pls_golite062009
  • nucleic acid binding
  • 4.99681957904233 bayes_pls_golite062009
  • transcription factor activity
  • 4.33152142980289 bayes_pls_golite062009
  • transcription activator activity
  • 3.70589483230587 bayes_pls_golite062009
  • sequence-specific DNA binding
  • 3.58179858678904 bayes_pls_golite062009
  • binding
  • 3.52874320222492 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
  • 2.60738445921725 bayes_pls_golite062009
  • transcription repressor activity
  • 2.22485867684613 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
  • 1.82365519759474 bayes_pls_golite062009
  • RNA polymerase activity
  • 1.82365519759474 bayes_pls_golite062009
  • transcription elongation regulator activity
  • 1.81270943531115 bayes_pls_golite062009
  • protein binding
  • 1.80415286835431 bayes_pls_golite062009
  • RNA binding
  • 0.992043085614693 bayes_pls_golite062009
  • transcription factor binding
  • 0.85714789329232 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
  • 0.66743181561551 bayes_pls_golite062009
  • nucleotidyltransferase activity
  • 0.237727660028553 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity, enhancer binding
  • 0.23177057841536 bayes_pls_golite062009
  • positive transcription elongation factor activity
  • 0.13524243942225 bayes_pls_golite062009
  • structural molecule activity
  • 0.111941063082739 bayes_pls_golite062009




    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)


    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle