Protein Overview: gi|119574692, gi...

General Information:
Name(s) found:	gi\|51476855 [NCBI NR] gi\|189054973 [NCBI NR] gi\|119574692 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|51476855\|emb\|CAH18395.1\| hypothetical protein [Homo sapiens] [NCBI NR] gi\|189054973\|dbj\|BAG37957.1\| unnamed protein product [Homo sapiens] [NCBI NR] gi\|119574692\|gb\|EAW54307.1\| DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo sapiens] [NCBI NR] Nucleolar RNA helicase II [hmr_yeast5_DM3-1_pombe.fasta] DEAD (Asp-Glu-Ala-Asp) box polypeptide 21; Gu protein; RNA helicase II/Gu alpha [HMR_022704.fasta] hypothetical protein [Homo sapiens] [nrdb_11152004_Chlamydomonas] DEAD (Asp-Glu-Ala-Asp) box polypeptide 21; Gu protein; RNA helicase II/Gu alpha; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21 [Human2242005.fasta] Tax_Id=9606 Splice Isoform 2 of Nucleolar RNA helicase 2 [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta] (NM_004728) DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21; 'Gu' protein; Gu protein [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta] Tax_Id=9606 Splice Isoform 2 of Nucleolar RNA helicase II [EBI-IPI_human_3.12_11-03-2005_con_reversed.fasta] Tax_Id=9606 Hypothetical protein DKFZp686F21172 [EBI-IPI_human_3.04_03-07-2005_reverse.fasta] DEAD (Asp-Glu-Ala-Asp) box polypeptide 21; Gu protein; RNA helicase II/Gu alpha; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 21 [Homo sapiens] [HumanGallus06162005.fasta] DEAD (Asp-Glu-Ala-Asp) box polypeptide 21; Gu protein; RNA helicase II/Gu alpha [Homo sapiens] [human-NCBI-042104-rand.fasta] unnamed protein product [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta] DEAD (Asp-Glu-Ala-Asp) box polypeptide 21, isoform CRA_c [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta] Tax_Id=9606 Isoform 2 of Nucleolar RNA helicase 2 [EBI-IPI_human_3.23_11-02-2006_con_reversed.fasta] Tax_Id=9606 Gene_Symbol=DDX21 Isoform 2 of Nucleolar RNA helicase 2 [human-ipi-250309-contam.fasta] IPI:IPI00477179.1\|SWISS-PROT:Q9NR30-2\|TREMBL:B2RDL0 Tax_Id=9606 Gene_Symbol=DDX21 Isoform 2 of Nucleolar RNA helicase 2 [ipi.HUMAN.fasta.20090807] Isoform 2 of Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 [011711_HMR.fasta] IPI:IPI00477179.1\|SWISS-PROT:Q9NR30-2 Tax_Id=9606 Gene_Symbol=DDX21 Isoform 2 of Nucleolar RNA helicase 2 [ipi.HUMAN.fasta.20100406] Isoform 2 of Nucleolar RNA helicase 2 GN=DDX21 [Doctor+uniprot-HUMAN-120911.fasta] Isoform of Q9NR30, Isoform 2 of Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 [2016-04-human-contam-aPKC-His-Par6.fasta]
Organism:	Homo sapiens
Length:	715 amino acids
Gene Ontology:
Cellular Component:	NONE FOUND
Biological Process:	NONE FOUND
Molecular Function:	NONE FOUND

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSPKSKKAK KKEEPSQNDI SPKTKSLRKK KEPIEKKVVS SKTKKVTKNE EPSEEEIDAP  60
   61 KPKKMKKEKE MNGETREKSP KLKNGFPHPE PDCNPSEAAS EESNSEIEQE IPVEQKEGAF 120
  121 SNFPISEETI KLLKGRGVTF LFPIQAKTFH HVYSGKDLIA QARTGTGKTF SFAIPLIEKL 180
  181 HGELQDRKRG RAPQVLVLAP TRELANQVSK DFSDITKKLS VACFYGGTPY GGQFERMRNG 240
  241 IDILVGTPGR IKDHIQNGKL DLTKLKHVVL DEVDQMLDMG FADQVEEILS VAYKKDSEDN 300
  301 PQTLLFSATC PHWVFNVAKK YMKSTYEQVD LIGKKTQKTA ITVEHLAIKC HWTQRAAVIG 360
  361 DVIRVYSGHQ GRTIIFCETK KEAQELSQNS AIKQDAQSLH GDIPQKQREI TLKGFRNGSF 420
  421 GVLVATNVAA RGLDIPEVDL VIQSSPPKDV ESYIHRSGRT GRAGRTGVCI CFYQHKEEYQ 480
  481 LVQVEQKAGI KFKRIGVPSA TEIIKASSKD AIRLLDSVPP TAISHFKQSA EKLIEEKGAV 540
  541 EALAAALAHI SGATSVDQRS LINSNVGFVT MILQCSIEMP NISYAWKELK EQLGEEIDSK 600
  601 VKGMVFLKGK LGVCFDVPTA SVTEIQEKWH DSRRWQLSVA TEQPELEGPR EGYGGFRGQR 660
  661 EGSRGFRGQR DGNRRFRGQR EGSRGPRGQR SGGGNKSNRS QNKGQKRSFS KAFGQ

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	None Entered	Sample pIC145 from april 2005	Okada, M., et al. (2006)
View Run	gi\|14317902, gi\|...	No Comments	Cheeseman, I.M., et al. (2004)
View Run	MIS12	No Comments	Cheeseman, I.M., et al. (2004)

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

Searching the YRC Public Image Repository, found results:

Currently showing to of results.

[View Search in the YRC Public Image Repository]

Searching the YRC Public Image Repository, found no results.

Ginzu Version Information

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

Gene Ontology predictions

No functions predicted.

Term	Confidence	Notes
translation initiation factor activity	8.25448175613623	bayes_pls_golite062009
	6.40066880991253	bayes_pls_golite062009
RNA binding	6.32219487559982	bayes_pls_golite062009
translation regulator activity	4.90183970829236	bayes_pls_golite062009
mRNA binding	4.87640532914983	bayes_pls_golite062009
translation factor activity, nucleic acid binding	4.72415388070659	bayes_pls_golite062009
nucleic acid binding	4.65259034341669	bayes_pls_golite062009
structural molecule activity	4.2958490777925	bayes_pls_golite062009
RNA cap binding	4.1452868296365	bayes_pls_golite062009
binding	3.48033873254013	bayes_pls_golite062009
telomeric DNA binding	3.14144520000442	bayes_pls_golite062009
snRNA binding	2.99850361909067	bayes_pls_golite062009
poly-pyrimidine tract binding	2.7133834347239	bayes_pls_golite062009
single-stranded RNA binding	2.55628738360472	bayes_pls_golite062009
transcription regulator activity	2.2045206027152	bayes_pls_golite062009
DNA binding	1.99030664201171	bayes_pls_golite062009
U1 snRNA binding	1.97699928565988	bayes_pls_golite062009
structure-specific DNA binding	1.33820479438671	bayes_pls_golite062009
single-stranded DNA binding	1.28888975042723	bayes_pls_golite062009
transcription repressor activity	1.26023364760328	bayes_pls_golite062009
cytoskeletal protein binding	1.13517096660218	bayes_pls_golite062009
transcription factor activity	1.09958329302628	bayes_pls_golite062009
protein binding	1.05805521997665	bayes_pls_golite062009
mRNA 5'-UTR binding	0.953943296217791	bayes_pls_golite062009
transcription elongation regulator activity	0.950588445732171	bayes_pls_golite062009
snoRNA binding	0.749770142991192	bayes_pls_golite062009
transporter activity	0.651859441112123	bayes_pls_golite062009
RNA polymerase II transcription factor activity	0.633093884585572	bayes_pls_golite062009
transmembrane transporter activity	0.514515120448404	bayes_pls_golite062009
mRNA 3'-UTR binding	0.462558743683805	bayes_pls_golite062009
general RNA polymerase II transcription factor activity	0.438822250839508	bayes_pls_golite062009
tubulin binding	0.411965381384795	bayes_pls_golite062009
sequence-specific DNA binding	0.327072171076297	bayes_pls_golite062009
microtubule binding	0.26848788775744	bayes_pls_golite062009
substrate-specific transporter activity	0.191850978900584	bayes_pls_golite062009
translation repressor activity, nucleic acid binding	0.147208072406136	bayes_pls_golite062009
ligase activity	0.115699011007988	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.105881213754909	bayes_pls_golite062009
pyrophosphatase activity	0.0694221760244125	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.0607402568023739	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.0581257157312914	bayes_pls_golite062009
protein phosphatase 2B binding	0.0244897898877268	bayes_pls_golite062009

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..117]	FFAS03	1.67	No description for 2j63A was found.
2	View Details	[118..337]	PSI-BLAST	36.522879	No description for 2gxqA was found.
3	View Details	[338..498]	PSI-BLAST	22.09691	No description for 2hjvA was found.
4	View Details	[499..715]	FFAS03	3.21	No description for 2e29A was found.

Protein Overview: gi|119574692, gi...

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: