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Protein Overview: YOR338W

General Information:
Name(s) found: YOR338W [SGD]
Description(s) found:
Found 27 descriptions.
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  • Putative protein of unknown function; YOR338W transcription is regulated by Azf1p and its transcript is a specific target of the G protein effector Scp160p; identified as being required for sporulation in a high-throughput mutant screen [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 363 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: ascospore formation [IMPLink to PubMed article]
    positive regulation of transcription from RNA polymerase II promoter [IMPLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDNMQFHSP APEHPQLNGG INKIPASHKI GYKLNQQVQR LAVVRNNIEE RLNSMESSHG  60
   61 QISDSSVVRA IDASIDDFLI PSPPLSPKLR QCPIISQPQL VNVESDHREL IMLTPVWEAG 120
  121 LNSQKYNHNT RNFLSQYSFF RDMKTTKRIP NKENRKLKVV KSVVNSEALP KRRRYDRKIK 180
  181 RRSRELYEDD GNRSENYDEE SAQEVPVRSV TPIRQVKRSL HTISSPLASQ GVVNNVPKYI 240
  241 PSMSWEKLPD YSPPLHTLPN SNNKVLKVEW KGSPMDLNHD PLKQRLHPAE LVLAQILRLP 300
  301 CDLYLDSKRR FFLEKVHRFK KGLPFRRTDA QKACRIDVNK ASRLFAAFEK VGWLQDKHFE 360
  361 KYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #14 Mitotic Prep2-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen BDF1 YOR338W 2 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] MSA 1.007966 View MSA. No confident structure predictions are available.
    2 View Details [97..363] MSA 14.023996 View MSA. No confident structure predictions are available.
    3 View Details [250..363] PSI-BLAST 27.0 Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.61657063316558 bayes_pls_golite062009
  • DNA binding
    		•  3.20600447901865 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.13775670276163 bayes_pls_golite062009
  • transcription factor activity
    		•  2.61318050866004 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.14408928200987 bayes_pls_golite062009
  • binding
    		•  2.12643314274039 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.77209608685482 bayes_pls_golite062009
  • transcription activator activity
    		•  1.75864690109096 bayes_pls_golite062009
  • protein binding
    		•  1.62529996900514 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.605733396003465 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.380372494934551 bayes_pls_golite062009
  • chromatin binding
    		•  0.346262410069781 bayes_pls_golite062009
  • transcription factor binding
    		•  0.109547968922689 bayes_pls_golite062009


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle