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Protein Overview: TDA9

General Information:
Name(s) found: TDA9 / YML081W [SGD]
Description(s) found:
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  • gi|6323559|ref|NP_013630.1| Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YML081w is not an essential gene; Yml081wp [Saccharomyces cerevisiae] [NCBI NR]
  • gi|2501692|sp|Q04545.1|YMI1_YEAST RecName: Full=Zinc finger protein YML081W [NCBI NR]
  • pir||S49645 probable membrane protein YML081w - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Zinc finger protein YML081W OS=Saccharomyces cerevisiae GN=YML081W PE=1 SV=1 [Swiss-Prot]
  • Protein involved in transcriptional control [mips]
  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YML081w is not an essential gene [SGD]
  • YML081W, Chr XIII from 104777-108532 [yeast_orfs2]
  • Chr XIII from 104777-108532 [yeastorf3.fasta]
  • (Q04545) Hypothetical 141.5 kDa zinc finger protein in TUB1-CPR3 intergenic region [4932.FASTACCERV.txt]
  • YML081W SGDID:S0004546, Chr XIII from 104777-108532, Uncharacterized ORF [yeastflysequest.fasta]
  • Yml081wp [Saccharomyces cerevisiae]gi|2501692|sp|Q04545|YMI1_YEAST Hypothetical 141.5 kDa zinc finger protein in TUB1-CPR3 intergenic regiongi|2132720|pir||S49645 probable membrane protein YML081w - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas]
  • YML081W SGDID:S000004546, Chr XIII from 104777-108532, Uncharacterized ORF, "Hypothetical protein" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta]
  • YML081W SGDID:S000004546, Chr XIII from 104777-108532, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YML081w is not an essential gene" [yeast-contam.fasta]
  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; YML081w is not an essential gene; Yml081wp [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Zinc finger protein YML081W [nr-271106-contam.fasta]
  • [chemostatdb.fasta]
  • TDA9 SGDID:S000004546, Chr XIII from 104777-108532, Genome Release 64-1-1, Verified ORF, "DNA-binding protein, putative transcription factor; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene" [yeast-030211-contam.fasta]
  • TDA9 SGDID:S000004546, Chr XIII from 104777-108532, Genome Release 64-2-1, Verified ORF, "Transcription factor that regulates acetate production; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene; TDA9 has a paralog, RSF2, that arose from the whole genome duplication" [20141208_orf_trans.fasta]
  • YML081W SGDID:S000004546, Chr XIII from 104777-108532, Genome Release 64-1-1, Verified ORF, "DNA-binding protein, putative transcription factor; green fluorescent protein (GFP)-fusion protein localizes to the nucleus; null mutant is sensitive to expression of the top1-T722A allele; not an essential gene" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 1251 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSEEFKGLP IKRDISSTIY ADRPPALSAP PCVGATGNDK IQVLPIPKKS RTIKTDKPRP  60
   61 FLCHICTRGF VRQEHLKRHQ RAHTNEKPFL CVFCGRCFAR RDLVLRHQHK LHSALVSKES 120
  121 INSKDKTEID AINDKNIIQI QGNKQTILPT PSNPLAKTAV QLKKAAKEKK NGKQGKLDLS 180
  181 PSYGANNHST DVSPSVGNSS TPAVIEETDS SSHFPLPDTN IPTKSKRHAS FSASSAFTYS 240
  241 SDNFQKLHQQ AKSDFDELQE SIPHQVGFST PQLTAQQLIE NAIESGVVDL ETLDLPPFLS 300
  301 LDGLPPASSS AAVAASEQID ICPSSATDTI SGANSTPNQA ATAPPFQLPI ARESSSLFLA 360
  361 NTPYLSDFLT MGSSYGGSGG FAKSITADPS LDYFNYKNHS HPDSRHNNSS SGINYSNNKN 420
  421 NNESIEKSQN NSNVINETID HTDIHAHHAD AHDDSFIESE EWLSKFIMDS QIDNDLKLNI 480
  481 NHFNDIGFNN LHPQNPTTHS EPRNMHNENR DMHRSASKFQ SVSENISPRE QMSLFKTKQN 540
  541 KAISKFLSDE KIPSTASPSS SASPVQFDKK NVDINEFLLD ESVSNLFTTR QIDLFKKNVN 600
  601 LYSPLFQNQK DAVSSTSLTP SLTTQTATTQ SGPGWTDSSQ KLTFFTEQLR NLIIKENNLK 660
  661 SNLFPTVDEL NHYVDLYQVE FHKYFPFIHL YSIIPSSENY PLVISISMIG ALYGFHSTHA 720
  721 LLLSKIARTR VRMFLENTRS NHDKTPIWLM QSLVLLTFTS IFSNDMNAFR TVNTQIMILV 780
  781 QLIKISKLNY PLENFIKPPI ESDHVLEYQD NPAVLNQFKA QYNTREQINR NFKYFILAQS 840
  841 RIRICHIVLL ISNLFKSLVD FDCCFHSIDL KCGVPCYNEV LFFCENSRTW NENLTRFNIV 900
  901 LDSKFSLIEV SNGESNYEKC LMYLSNGNPY LYKNAKISFK TLLSLLISIH EKINIERDAL 960
  961 KDSYESDFHA KNVQWRMHSR PLVATMLKHW ELLYIKNGGI LALSDENLPI INTNPSFRLI1020
 1021 IPLYFFAKLR KCLDIAPTLR CIWNQDWNSM NSSLEKVCYE RESLREATEY AVSVITFWID1080
 1081 TVSVMKGKST QTPIFTITCI FVSILVIAGY MRRLEDFAQN KNSDCMIGSL KSTDRILWLK1140
 1141 AFKTLKRIES HLSEREYKLQ TFAEFLRVPD NGSLDIESLD SSLIENTLNS HDVTNQALDI1200
 1201 ITRTRLSSRT LYCGARILGD TPVWPVSLLF AHALQSRAIY NINHRKSVNS V

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run RPA135 No Comments Schneider, DA, et al. (2006)
    View Run MLP2 #21 Asynchronous Prep2-IMAC Phosphopeptide enrichment A1 Keck JM, et al. (2011)
    View Run MLP2 #12 Mitotic Prep1-TiO2 Flowthrough Keck JM, et al. (2011)
    View Run MLP2 #10 Mitotic Prep1-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen PRP42 TDA9 1 Unpublished Fields Lab Data
    View Screen VAM7 TDA9 1 Unpublished Fields Lab Data
    View Screen YPP1 TDA9 1 Unpublished Fields Lab Data
    View Screen PFK1 TDA9 1 Unpublished Fields Lab Data
    View Screen PRR1 TDA9 1 Unpublished Fields Lab Data
    View Screen TPK2 TDA9 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data TDA9 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..155] PSI-BLAST 189.927757 ADR1
    2 View Details [156..217] PSI-BLAST 3.0 Tramtrack protein (two zinc-finger peptide)
    3 View Details [218..275] MSA 9.825997 View MSA. No confident structure predictions are available.
    4 View Details [276..404] MSA 2.550992 View MSA. No confident structure predictions are available.
    5 View Details [405..468] deduced N/A No confident structure predictions are available.
    6 View Details [469..1251] MSA 1.040001 View MSA. No confident structure predictions are available.
    7 View Details [1007..1123] deduced N/A No confident structure predictions are available.
    8 View Details [1124..1251] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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