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Protein Overview: YLR072W

General Information:
Name(s) found: YLR072W [SGD]
Description(s) found:
Found 22 descriptions.
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  • Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm in a punctate pattern; YLR072W is not an esssential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 693 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWGDSMRELG DAMDNELNAV KPVVEEGGMD GARKFIKGKS FQKSSTEHML ISPGRDGSVP  60
   61 LNGLKSSPAD PHLSDVNSIL DNHRGGGETA LTSVNNIIMA TSTNGDSDGV DGDAKRPSIS 120
  121 NCSSRSSFFD TVLSTFSLKS NSQDTVTNEV KNIEVQFASE EANKKFRQMF KPLAPNTRLI 180
  181 TDYFCYFHRE FPYQGRIYLS NTHLCFNSTV LNWMAKLQIP LNEIKYLDKV TTNSSAISVE 240
  241 TVTNRYTFSG FIARDEVFQL ITRVWSKENL TNINDVLEVD ERVSKKKGIS STPSSIFNNV 300
  301 STNAYNDFIS TTTTEPTSRA SYMSENDMLI EEAIRSVDDY MGTPRASPSS SSSSSSSSSS 360
  361 LGSSTTYYCR PVYRLKPNAP FQYEGPFHVQ ETMDFPYKPE ANNEYVLLER QFSVPPGLLF 420
  421 IMMFNEDNPV FELSFLKTQD SSNISHIGTF EKVNKDGQHY REFQYTKQLH FPVGPKSTNC 480
  481 EVAEILLHCD WERYINVLSI TRTPNVPSGT SFSTRTRYMF RWDDQGQGCI LKISFWVDWN 540
  541 ASSWIKPMVE SNCKNGQISA TKDLVKLVEE FVEKYVELSK EKADTLKPLP SVTSFGSPRK 600
  601 VAAPELTMVQ PESKPEAEAE ISEIGSDRWR FNWVNIIILV LLVLNLLYLM KLNKKMDKLT 660
  661 NLMTHKDEVV AHATLLDIPA KVQWSRPRRG DVL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Krogan NJ, et al. (2006) HFM1 LYS4 NEW1 RBG1 SGD1 SOK1 SSZ1 TCB1 TGL5 TMA46 YEF3 YLR072W ZUO1

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen BUD14 YLR072W 2 Unpublished Fields Lab Data
    View Screen CDC23 YLR072W 1 Unpublished Fields Lab Data
    View Screen PRP16 YLR072W 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data YLR072W Huh WK, et al. (2003)
    View Data YLR072W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] deduced N/A No confident structure predictions are available.
    2 View Details [113..275] Pfam 28.142668 GRAM domain No confident structure predictions are available.
    3 View Details [276..353] deduced N/A No confident structure predictions are available.
    4 View Details [354..588] MSA 4.024961 View MSA. No confident structure predictions are available.
    5 View Details [589..693] deduced N/A Confident ab initio structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.37262912917599 bayes_pls_golite062009
  • protein binding
    		•  1.01923599216718 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  0.240804061374211 bayes_pls_golite062009
  • catalytic activity
    		•  0.0521786759115963 bayes_pls_golite062009
    5 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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