YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YKL023W

General Information:
Name(s) found: YKL023W [SGD]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • Putative protein of unknown function, predicted by computational methods to be involved in mRNA degradation; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 277 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKEELLGFL LDDSIDSQKR CVTDHEAYSN WLKNDNDERT AHEESSSQST IAALNKKKQT  60
   61 EAAQEDIEEL LNGLEGIIGG ADPRNLKSKS KRKTKKGGSK PREENVNTEK HIVMLEVEDF 120
  121 SDMSTHEDVN GASPSPNLDR SKKNEKRRKN AKELSYDELK DKLEVTTRKS RLECKDLKKK 180
  181 VHGLERRNLE LEQRLEELKI ENQTLIEINN KLLKNTNEDE INKSQRNKEK DRKRRERRTA 240
  241 RRKDERKQEK KQEKKQDNKT SQSFPSSTDM NGQPIEF

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Riffle et al. (2010) (Unpublished Data) KEM1 SKI2 SKI3 SKI8 YKL023W
    View Details Krogan NJ, et al. (2006) ENT5 SKI2 SKI3 SKI8 YKL023W

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YKL023W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..277] PSI-BLAST 3.39794 Heavy meromyosin subfragment


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle