YRC Public Data Repository - Protein Structure Prediction

Protein:	YKL023W
Organism:	Saccharomyces cerevisiae
Length:	277 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YKL023W.

Description	E-value	Query Range	Subject Range
gi\|282335, gi\|25... - pir\|\|A41971 surface protein pspA precursor - Streptococcus pneumoniae, pir\|\|A97887 surface protein ... gi\|15457660, gi\|... - gi\|15902165\|ref\|NP_357715.1\| surface protein pspA precursor [Streptococcus pneumoniae R6], gi\|154576... gi\|116515876, gi... - gi\|116515876\|ref\|YP_815641.1\| pneumococcal surface protein A [Streptococcus pneumoniae D39], gi\|1160...	2.0E-42	[11..265]	[67..322]
gi\|6752401 - gi\|6752401\|gb\|AAF27711.1\|AF071815_1 PspA [Streptococcus pneumoniae]	5.0E-32	[10..264]	[66..326]
gi\|1160355 - gi\|1160355\|gb\|AAB00542.1\| UNC-89	6.0E-31	[15..270]	[1586..1838]
YKL023W - Putative protein of unknown function, predicted by computational methods to be involved in mRNA degr...	2.0E-29	[1..277]	[1..277]
gi\|7549210 - gi\|7549210\|gb\|AAF63787.1\|AF142406_1 200 kDa antigen p200 [Babesia bigemina]	6.0E-28	[9..268]	[183..432]

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Predicted Domain #1

Region A:
Residues: [1-277]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKEELLGFL LDDSIDSQKR CVTDHEAYSN WLKNDNDERT AHEESSSQST IAALNKKKQT  60
   61 EAAQEDIEEL LNGLEGIIGG ADPRNLKSKS KRKTKKGGSK PREENVNTEK HIVMLEVEDF 120
  121 SDMSTHEDVN GASPSPNLDR SKKNEKRRKN AKELSYDELK DKLEVTTRKS RLECKDLKKK 180
  181 VHGLERRNLE LEQRLEELKI ENQTLIEINN KLLKNTNEDE INKSQRNKEK DRKRRERRTA 240
  241 RRKDERKQEK KQEKKQDNKT SQSFPSSTDM NGQPIEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits