Protein Overview: PBP4

General Information:
Name(s) found:	PBP4 / YDL053C [SGD]
Description(s) found: SHOW ONLY BEST	gi\|74583631\|sp\|Q07362.1\|PBP4_YEAST RecName: Full=Protein PBP4; AltName: Full=PBP1-binding protein 4 [NCBI NR] gi\|6320150\|ref\|NP_010230.1\| Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay; Pbp4p [Saccharomyces cerevisiae] [NCBI NR] pir\|\|S67588 hypothetical protein YDL053c - yeast (Saccharomyces cerevisiae) [NCBI NR] gi\|1431049\|emb\|CAA98615.1\| unnamed protein product [Saccharomyces cerevisiae] [NCBI NR] Protein PBP4 OS=Saccharomyces cerevisiae GN=PBP4 PE=1 SV=1 [Swiss-Prot] PBP4 Pbp1p-Binding Protein [mips] Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay [SGD] YDL053C, Chr IV from 361698-362255, reverse complement [yeast_orfs2] Chr IV from 361698-362255, reverse complement [yeastorf3.fasta] Chr IV from 362255-361698, reverse complement [yeastorf5.fasta] >Q07362 (Q07362) Chromosome IV reading frame ORF YDL053C [4932.FASTACCERV.txt] PBP4 SGDID:S0002211, Chr IV from 362256-361699, reverse complement, Uncharacterized ORF [yeastflysequest.fasta] Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system [Saccharomyces cerevisiae]gi\|1431049\|emb\|CAA98615.1\| unnamed protein product [Saccharomyces cerevisiae]gi\|2131320\|pir\|\|S67588 hypothetical prot [nrdb_11152004_Chlamydomonas] (Q07362) S.cerevisiae chromosome IV reading frame ORF YDL053c [cerv4932.FASTAC] PBP4 SGDID:S000002211, Chr IV from 362256-361699, reverse complement, Uncharacterized ORF, "Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system" [SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta] PBP4 SGDID:S000002211, Chr IV from 362256-361699, reverse complement, Verified ORF, "Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay" [yeast-contam.fasta] Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay; Pbp4p [Saccharomyces cerevisiae] [nr-271106-contam.fasta] unnamed protein product [Saccharomyces cerevisiae] [nr-271106-contam.fasta] [chemostatdb.fasta] Protein PBP4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PBP4 PE=1 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta] PBP4 SGDID:S000002211, Chr IV from 362256-361699, Genome Release 64-1-1, reverse complement, Verified ORF, "Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay" [yeast-030211-contam.fasta] PBP4 SGDID:S000002211, Chr IV from 362256-361699, Genome Release 64-2-1, reverse complement, Verified ORF, "Pbp1p binding protein; interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay; relative distribution to the nucleus increases upon DNA replication stress" [20141208_orf_trans.fasta] YDL053C SGDID:S000002211, Chr IV from 362256-361699, Genome Release 64-1-1, reverse complement, Verified ORF, "Pbp1p binding protein, interacts strongly with Pab1p-binding protein 1 (Pbp1p) in the yeast two-hybrid system; also interacts with Lsm12p in a copurification assay" [2016-01-SGD_Yeast_Contam_Riffle_20140507-Ska-Hec-110-tubulin.fasta]
Organism:	Saccharomyces cerevisiae
Length:	185 amino acids
Gene Ontology:
Cellular Component:	nucleus [IDA] cytoplasm [IDA]
Biological Process:	biological_process [ND]
Molecular Function:	molecular_function [ND]

Sequence:

Sequence:
[PDR BLAST]
[ProtParam]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTSTTSVD GRTSSTLKAT LSASGPNSNG PTPAVLPQKP KLTGWAQAAA KALPRQQQQQ  60
   61 QQARKDDSVA VQPANTKTKT IASTAPPANI KGSSTANGSS TNKKFKRANK QPYNREEVRS 120
  121 YMHKLFQSYT AGEKSHSMKT YKQVLSETAS GRVSTATDWG TVSSSKNKNK KYGCLSDIAK 180
  181 VLRNQ

Protein Complex Data

	PUBLICATION	TOPOLOGY	COCOMPLEXED PROTEINS
View Details	Riffle et al. (2010) (Unpublished Data)		NHP6A NOP53 PBP4 PUF4 RPL11B RPL17B RPL20A RPL2A, RPL2B RPL32 RPL36A RPL42B, RPL42A RPL4A RPS16B, RPS16A RPS23B, RPS23A
View Details	Krogan NJ, et al. (2006)		ALG5 BRE5 CSN12 CUP2 DBP7 LUG1 MET10 MSC7 MSE1 NOP53 NPY1 PBP4 RPF2 RRS1 SAS5 UME6 YGR126W YHR127W YPR045C YRA1

Mass Spectrometry Data

The following runs contain data for this protein:

	BAIT	COMMENTS	PUBLICATION
View Run	DAD1	Dam1-765 complex purified from yeast with Dad1-TAP	Shimogawa MM, et al. (2006)
View Run	BOI1	Sample bob1 (2nd set) from october 2005	McCusker D, et al (2007)

Yeast Two-Hybrid Data

The following interactions contain this protein:

NOT SHOWING SINGLE HITS. [ Show Single Hits ]

[View our yeast two-hybrid interpretation guidelines.]

No yeast two-hybrid interactions found for this protein.

	PROTEIN(S)	PUBLICATION
View Data	PBP4	Huh WK, et al. (2003)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..185]	deduced	N/A	No confident structure predictions are available.

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Protein Overview: PBP4

Protein Complex Data

Mass Spectrometry Data

Yeast Two-Hybrid Data

Microscopy / Localization Data

Protein Structure Data

Philius Transmembrane Prediction: