YRC Public Data Repository - Protein Structure Prediction

Protein:	PBP4
Organism:	Saccharomyces cerevisiae
Length:	185 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBP4.

Description	E-value	Query Range	Subject Range
gi\|49526734 - gi\|49526734\|emb\|CAG60361.1\| unnamed protein product [Candida glabrata] gi\|49526734, gi\|... - gi\|50289985\|ref\|XP_447424.1\| hypothetical protein CAGL0I04026g [Candida glabrata CBS138], gi\|4952673...	95.0	[0..32]	[184..3]
gi\|45199112, gi\|... - gi\|45199112\|ref\|NP_986141.1\| AFR594Wp [Ashbya gossypii ATCC 10895], gi\|44985187\|gb\|AAS53965.1\| AFR59... gi\|44985187 - gi\|44985187\|gb\|AAS53965.1\| AFR594Wp [Ashbya gossypii ATCC 10895]	50.0	[0..87]	[184..58]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTSTTSVD GRTSSTLKAT LSASGPNSNG PTPAVLPQKP KLTGWAQAAA KALPRQQQQQ  60
   61 QQARKDDSVA VQPANTKTKT IASTAPPANI KGSSTANGSS TNKKFKRANK QPYNREEVRS 120
  121 YMHKLFQSYT AGEKSHSMKT YKQVLSETAS GRVSTATDWG TVSSSKNKNK KYGCLSDIAK 180
  181 VLRNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits