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Protein Overview: YBR242W

General Information:
Name(s) found: YBR242W [SGD]
Description(s) found:
Found 26 descriptions.
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  • Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus; YBR242W is not an essential gene [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 238 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    Biological Process: biological_process [ND]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATITNKKS CSGSVEAGKT RLTTEWKPES QVPQYVKNEL SKPHPNYILA FLNVVQQLKI  60
   61 QRRTGYLDLG IKECESISDH MYRLSIITML IKDSRVNRDK CVRIALVHDI AESLVGDITP 120
  121 VDPIGKEEKH RREWETIKYL CNALIKPYNE IAAKEIMDDW LAYENVTSLE ARYVKDIDKY 180
  181 EMLVQCFEYE REYKGTKNFD DFFGAVASIK TDEVKGWTSD LVVQRQKYFA DLTQSITK

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Ho Y, et al. (2002) CIC1 ERB1 RPF1 SRP54 TMA108 VPS35 YBR242W YPD1 YTM1

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run MLP2 #24 Asynchronous Prep3-TiO2 Phosphopeptide enrichment Keck JM, et al. (2011)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen PSF3 YBR242W 1 Hazbun TR, et al. (2003)
    View Screen APC5 YBR242W 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

      PROTEIN(S) PUBLICATION
    View Data YBR242W Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..71] deduced N/A No confident structure predictions are available.
    2 View Details [72..238] Pfam 8.283997 HD domain No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.789902125235751 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.745631665100501 bayes_pls_golite062009
  • catalytic activity
    		•  0.527877614007078 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  0.494691732255975 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle