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Protein Overview: SLM4

General Information:
Name(s) found: SLM4 / YBR077C [SGD]
Description(s) found:
Found 29 descriptions.
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  • Component of the EGO complex, which is involved in the regulation of microautophagy, and of the GSE complex, which is required for proper sorting of amino acid permease Gap1p; gene exhibits synthetic genetic interaction with MSS4 [SGD]
    • Organism: Saccharomyces cerevisiae
    Length: 162 amino acids

    Gene Ontology:
    Cellular Component: late endosome membrane [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    fungal-type vacuole membrane [IDALink to PubMed article]
    vacuolar membrane [IDALink to PubMed article]
    Biological Process: signal transduction [IMPLink to PubMed article]
    response to drug [IMPLink to PubMed article]
    microautophagy [IMPLink to PubMed article]
    Molecular Function: phosphatidylinositol-3,4-bisphosphate binding [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMLHSKNVK GFLENTLKPY DLHSVDFKTS SLQSSMIITA TNGGILSYAT SNNDVPKNSI  60
   61 NEINSVNNLK MMSLLIKDKW SEDENDTEEQ HSNSCYPVEI DSFKTKIYTY EMEDLHTCVA 120
  121 QIPNSDLLLL FIAEGSFPYG LLVIKIERAM RELTDLFGYK LG

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Qiu et al. (2008) ATG20 GTR2 MEH1 SLM4

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen SAM35 SLM4 1 Unpublished Fields Lab Data
    View Screen NUP2 SLM4 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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      PROTEIN(S) PUBLICATION
    View Data SLM4 Huh WK, et al. (2003)

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.91

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle