YRC Public Data Repository - Protein Structure Prediction

Protein:	SLM4
Organism:	Saccharomyces cerevisiae
Length:	162 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLM4.

Description	E-value	Query Range	Subject Range
gi\|45200893, gi\|... - gi\|45200893\|ref\|NP_986463.1\| AGL204Cp [Ashbya gossypii ATCC 10895], gi\|44985663\|gb\|AAS54287.1\| AGL20... gi\|44985663 - gi\|44985663\|gb\|AAS54287.1\| AGL204Cp [Ashbya gossypii ATCC 10895]	155.0	[0..1]	[161..67]
gi\|49528739 - gi\|49528739\|emb\|CAG62401.1\| unnamed protein product [Candida glabrata] gi\|49528739, gi\|... - gi\|50294027\|ref\|XP_449425.1\| hypothetical protein CAGL0M01848g [Candida glabrata CBS138], gi\|4952873...	112.0	[0..3]	[162..1]
gi\|49644744, gi\|... - gi\|50311169\|ref\|XP_455608.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644744\|emb\|CAG9831... gi\|49644744\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	107.0	[0..3]	[161..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMLHSKNVK GFLENTLKPY DLHSVDFKTS SLQSSMIITA TNGGILSYAT SNNDVPKNSI  60
   61 NEINSVNNLK MMSLLIKDKW SEDENDTEEQ HSNSCYPVEI DSFKTKIYTY EMEDLHTCVA 120
  121 QIPNSDLLLL FIAEGSFPYG LLVIKIERAM RELTDLFGYK LG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits