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Protein Overview: cul-5

General Information:
Name(s) found: cul-5 / CE41096 [WormBase]
Description(s) found:
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  • WBGene00000840 locus:cul-5 Cullin-5 status:Partially_confirmed UniProt:Q23639 protein_id:CAA94852.2 [WormBase]
  • gi|193209350|ref|NP_505616.2| CULlin family member (cul-5) [Caenorhabditis elegans] [NCBI NR]
  • gi|166214913|sp|Q23639.2|CUL5_CAEEL RecName: Full=Cullin-5; Short=CUL-5 [NCBI NR]
  • gi|148472859|emb|CAA94852.2| C. elegans protein ZK856.1, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • Cullin-5 OS=Caenorhabditis elegans GN=cul-5 PE=1 SV=2 [Swiss-Prot]
  • [wormpep130-phg-ecoli-orf-rand.fasta]
  • CE41096 WBGene00000840 locus:cul-5 Cullin family status:Partially_confirmed UniProt:Q23639 protein_id:CAA94852.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE41096 WBGene00000840 locus:cul-5 Cullin family status:Partially_confirmed UniProt:Q23639 protein_id:CAA94852.2| [wormORF-contam.fasta]
  • [wormORF-contam.fasta]
  • CE41096 WBGene00000840 locus:cul-5 Cullin family status:Partially_confirmed SW:Q23639 protein_id:CAA94852.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE41096 WBGene00000840 locus:cul-5 status:Partially_confirmed UniProt:Q23639 protein_id:CAA94852.2 Cullin-5 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 765 amino acids

    Gene Ontology:
    Cellular Component: cullin-RING ubiquitin ligase complex [IEALink to PubMed article]
    Biological Process: DNA repair [IMPLink to PubMed article]
    cell cycle [IEALink to PubMed article]
    Molecular Function: ubiquitin protein ligase binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFDEEWSKA DPIVHALLHQ KSVTPAAWQD LFYHVYKITS WVDDGPLKIR DILTRCINDY  60
   61 VHEANKRIRS LQTDGSLLIG YIKEWNRFYQ QANILPLPFK KIDESSRRRS VPETPEESIR 120
  121 TVMLEKWNEI IFMNISEQLL VEALRLVKEE RDGNIIDAQN VIGIRESFVA LNDRAGEDPL 180
  181 LVYRQSFERQ FIEQTTEYYK KICGNLLNEL GVLEYMVYAD KKLEEEQQRA KRYLEMNSPT 240
  241 SGKHMEKAVI ALVESFEDTI LAECSKLIAS KDVERLQRLY RLIRRTRSGI DTVLKCIDTH 300
  301 IRTEGLNDMR NNAENLSTDP ERYVQQLLLM FDKFSSLVRE GFCDDARLLT ARDKAFRAVV 360
  361 NDSSIFKTEM MNKKGRTLSV ESKCAELLAN YCDLLLRKTQ LSKKLTSEEI DEKLNQVLLV 420
  421 LKYVENKDVF MRFHRAHLSR RLILEMSADQ EKEEMMVTKL RECGMPSDAV NKLSRMLQDI 480
  481 ELNKDMNSSF KKALTGTNNN KSIADSINMK VLNGGAWGRG GSERIRFSLP RELEDFVPEM 540
  541 EAFYKKQHNG RKLCWMHHWS SGTMVFGTAN GGRFDLECTT FQMAVLFCFN DRAHDKISLE 600
  601 TLRLATELPD AELNRTLLSL VAYPKMRYQI LLCDVPSTTV TARDFTDSTK FLINHDFNVV 660
  661 KNGKSQQRGK VNLIGRLQLS LEANAEKEHE SIVALRELRV QEGIVKILKT RKTYTLAQLT 720
  721 MELVEILKPL FIPNRKIIKE QIDWLIENKY MERRADDINT FVYIS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..765] PSI-BLAST 1000.0 Crystal Structure of The Cand1-Cul1-Roc1 Complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ubiquitin-protein ligase activity
    		•  9.47178230940453 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  9.15192834197166 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  8.12051073361876 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  6.87003086224111 bayes_pls_golite062009
  • vasopressin activated calcium mobilizing receptor activity
    		•  6.55844152294696 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.55329976718261 bayes_pls_golite062009
  • transcription factor activity
    		•  4.33152142980289 bayes_pls_golite062009
  • transcription repressor activity
    		•  3.85678231380989 bayes_pls_golite062009
  • ligase activity
    		•  3.66453881539688 bayes_pls_golite062009
  • transcription activator activity
    		•  2.37668609508629 bayes_pls_golite062009
  • binding
    		•  2.3219000606044 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.21939548334548 bayes_pls_golite062009
  • protein binding
    		•  2.20237620151495 bayes_pls_golite062009
  • DNA binding
    		•  2.06132216820898 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.70025468248325 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.33374581364046 bayes_pls_golite062009
  • specific transcriptional repressor activity
    		•  0.96257232341735 bayes_pls_golite062009
  • transporter activity
    		•  0.891050405674973 bayes_pls_golite062009
  • transcription factor binding
    		•  0.85714789329232 bayes_pls_golite062009
  • DNA replication origin binding
    		•  0.71823621709622 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.697234220778482 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.648150681919233 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.368917395770011 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.322180400748724 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.300899564141452 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.286130392009263 bayes_pls_golite062009
  • structural molecule activity
    		•  0.272316540117209 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.257777071965243 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.249771970501337 bayes_pls_golite062009
  • catalytic activity
    		•  0.201606344181603 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  0.175575779922515 bayes_pls_golite062009
  • hydrolase activity
    		•  0.140191206949582 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.107671044044222 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.0912115683429473 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.0856082199488197 bayes_pls_golite062009
  • transferase activity
    		•  0.064832527337659 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle