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Protein Overview: gi|24349405, gi|...

General Information:
Name(s) found: gi|24374743 [NCBI NR]
gi|24349405 [NCBI NR]
Description(s) found:
Found 4 descriptions.
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  • gi|24374743|ref|NP_718786.1| flagellar regulatory protein B [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24349405|gb|AAN56230.1|AE015760_9 flagellar regulatory protein B [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 360 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: regulation of flagellum assembly [ISSLink to PubMed article]
    two-component signal transduction system (phosphorelay) [ISSLink to PubMed article]
    ciliary or flagellar motility [ISSLink to PubMed article]
    Molecular Function: two-component sensor activity [ISSLink to PubMed article]
    protein kinase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAHPLAQLE TFKHTSKQWN QLREAANMSN RMEHILQAMP SGVVILNGDG IVTDANPVAV  60
   61 ELLEQSLCGA RWIDVIHTAF APQDDDGHEV SLRNGRRVKL AITPLTPEPG QLIVLTDLTE 120
  121 TRLLQKNLSH LQRLSALGKM VATLAHQVRT PLSAALLYAA NLASPKLSDS AKVKFQQKLV 180
  181 DRLNELERQV NDMLLMAKGR QDELGELINL NDVIENVVAN CEPIVAKHGA ELTVTNASNG 240
  241 LMLANVNALS SAVNNLVMNS LEAGATQIQL VANEIDDQLH LNVVDNGKGL DAKMQQRVLE 300
  301 PFFTTKAQGT GLGLAVVQSV VRNHGGQLQL NCMPNKGCTV SLTFPQAKSA TVLPLEKSHV 360
  361

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..109] PSI-BLAST 3.69897 Histidine kinase FixL heme domain
    2 View Details [110..360] PSI-BLAST 35.0 Structure of the entire cytoplasmic portion of a sensor histidine kinase protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ion transmembrane transporter activity
    		•  1.94020112661684 bayes_pls_golite062009
  • binding
    		•  1.79230776794479 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  1.70629448457771 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.55042643398568 bayes_pls_golite062009
  • two-component response regulator activity
    		•  1.45691562840107 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  1.31850321187865 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.13913685347546 bayes_pls_golite062009
  • protein binding
    		•  1.0133195984081 bayes_pls_golite062009
  • potassium channel activity
    		•  0.93265112299626 bayes_pls_golite062009
  • voltage-gated ion channel activity
    		•  0.92661046549451 bayes_pls_golite062009
  • voltage-gated cation channel activity
    		•  0.926512767264521 bayes_pls_golite062009
  • voltage-gated potassium channel activity
    		•  0.92204538811959 bayes_pls_golite062009
  • voltage-gated channel activity
    		•  0.91469735366704 bayes_pls_golite062009
  • ion channel activity
    		•  0.75430461252947 bayes_pls_golite062009
  • cation channel activity
    		•  0.73262554730695 bayes_pls_golite062009
  • DNA binding
    		•  0.73243452463464 bayes_pls_golite062009
  • gated channel activity
    		•  0.67217953143815 bayes_pls_golite062009
  • substrate-specific channel activity
    		•  0.650205954115699 bayes_pls_golite062009
  • channel activity
    		•  0.64202076714636 bayes_pls_golite062009
  • passive transmembrane transporter activity
    		•  0.64202076714636 bayes_pls_golite062009
  • two-component sensor activity
    		•  0.58151911764083 bayes_pls_golite062009
  • protein histidine kinase activity
    		•  0.56538125817883 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.5545839402512 bayes_pls_golite062009
  • phosphotransferase activity, nitrogenous group as acceptor
    		•  0.518111391350209 bayes_pls_golite062009
  • signal transducer activity
    		•  0.441034662376355 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.441034662376355 bayes_pls_golite062009
  • transcription factor activity
    		•  0.36759096137141 bayes_pls_golite062009
  • transporter activity
    		•  0.360938622392148 bayes_pls_golite062009
  • catalytic activity
    		•  0.285447488878019 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  0.217804199010847 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle