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Protein Overview: gi|24373384, gi|...

General Information:
Name(s) found: gi|24373384 [NCBI NR]
gi|24347650 [NCBI NR]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • gi|24373384|ref|NP_717427.1| ATP-dependent DNA helicase DinG [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24347650|gb|AAN54871.1|AE015625_14 ATP-dependent helicase DinG [Shewanella oneidensis MR-1] [NCBI NR]
    • Organism: Shewanella oneidensis MR-1
    Length: 690 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: DNA repair [ISSLink to PubMed article]
    Molecular Function: DNA helicase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPDNVKNQI RAIYKDIAAS LPNFRPRREQ NFMVAEISKT LAGDYDKDRR IIVVEAGTGI  60
   61 GKSLSYILGT IPLALASKKK VCIATATVAL QEQLLHKDLP FFLEQSGLNF RFGLVKGRQR 120
  121 YVCLSKLAML IGDDNSTQMA MWQTKPDNSQ IAMLQTLLND VNEGRWNGEI DTLSTPIPDH 180
  181 LWQQIACDKH SCHRQLASHR NCPFHKARED VDTWDVLIAN HSLLFADLEL GGGVILPNPE 240
  241 DVFYVIDEAH HLPIVARDFS SAQATLRGAA DWLEKVGKTS AKLQNQIKSN NIIAPAQAMQ 300
  301 DHIGDLIGQL NQVAHYCDTQ TKQFANPESR YRFEHGKLPG ALKIPAENLA ATSNLALKQF 360
  361 NKMQLLLAEA IKDGDIPKHQ AEALQAEMGF MLQRLENLQK LWKMMAKEDS NKGAPMARWI 420
  421 ELITGKQVDY LFSASPIEVG FMLETMLWQK AAGVVLCSAT LRALNNFDHF AHQVGLSLKD 480
  481 GSRYLALQSP FDYPNNATLY LPKMKTEPTD DAYTAELAEQ ILQLIEGEMA TLVLFASYWQ 540
  541 MEKVAELLEG KLALEILIQG NAPRQQLLET HKAKCDKGEP SILFGTGSFS EGLDLPGDYL 600
  601 TNLIVTKLPF AVPTSPVEQA HAEYVKIKGG NPFLQLTIPD ASRKLIQSCG RLLRKEQDYG 660
  661 RVTILDRRLV TKRYGKSLLD ALPPFRRVIE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..690] PSI-BLAST 57.39794 No description for 2fdcA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  2.8600635241996 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  2.72222787956584 bayes_pls_golite062009
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  2.60873257753475 bayes_pls_golite062009
  • hydrolase activity
    		•  2.55157966585974 bayes_pls_golite062009
  • dATP binding
    		•  2.44149059794577 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.21184938313192 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.09345198747025 bayes_pls_golite062009
  • endonuclease activity
    		•  1.96689197136388 bayes_pls_golite062009
  • DNA binding
    		•  1.94055378599526 bayes_pls_golite062009
  • helicase activity
    		•  1.70242731830224 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.63960194106079 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.61735400124552 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.60404584546501 bayes_pls_golite062009
  • purine deoxyribonucleotide binding
    		•  1.4428455823518 bayes_pls_golite062009
  • adenyl deoxyribonucleotide binding
    		•  1.4428455823518 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.2539059700735 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2155186842031 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  1.18669029764243 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  1.117585097627 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.72881469450553 bayes_pls_golite062009
  • transcription factor activity
    		•  0.682439846757997 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.568457189190858 bayes_pls_golite062009
  • mismatched DNA binding
    		•  0.31144582840038 bayes_pls_golite062009
  • DNA strand annealing activity
    		•  0.283577486331079 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  0.26252931460003 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.243902356228423 bayes_pls_golite062009
  • exodeoxyribonuclease V activity
    		•  0.185603938981231 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.181509771587324 bayes_pls_golite062009
  • protein binding
    		•  0.170837278876362 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.147579541298736 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.141364252067841 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  0.113504049290503 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  0.111293884322157 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle