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Protein Overview: gi|24372854, gi|...

General Information:
Name(s) found: gi|24372854 [NCBI NR]
gi|24346962 [NCBI NR]
Description(s) found:
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  • gi|24372854|ref|NP_716896.1| polyamine ABC transporter, permease protein [Shewanella oneidensis MR-1] [NCBI NR]
  • gi|24346962|gb|AAN54341.1|AE015571_4 polyamine ABC transporter, permease protein [Shewanella oneidensis MR-1] [NCBI NR]
  • polyamine ABC transporter, permease protein [Shewanella oneidensis MR-1]gi|24346962|gb|AAN54341.1| polyamine ABC transporter, permease protein [Shewanella oneidensis MR-1] [nrdb_11152004_Chlamydomonas]
  • polyamine ABC transporter, permease protein [Shewanella oneidensis MR-1] [nr-271106-contam.fasta]
    • Organism: Shewanella oneidensis MR-1
    Length: 271 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: spermidine transport [ISSLink to PubMed article]
    putrescine transport [ISSLink to PubMed article]
    Molecular Function: polyamine-transporting ATPase activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLSFSSVM LWFGLLFLYA PMLILVIYSF NESKLVTVWG GFSPKWYGEL FKDQQILDAV  60
   61 WTSLRIAFYS STMAVIIGTM AAFVMTRFKR SWAKLTLSNM ITAPLVMPEV ITGLSLLLLF 120
  121 VHMADLLGWP KERGMVTVWI AHSTFCAAYV AVVVSSRLRE LDRSIEEAAM DLGATPLKTF 180
  181 FLITVPMISP ALVAGWLLSF SLSLDDLVIS SFASGPGATT LPMVVFSSVR LGVSPKINAL 240
  241 ATLIILCVSL IAFLSWYMAR RAEKRERMPL N

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..271] PSI-BLAST 20.69897 No description for 2onkC was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transporter activity
    		•  4.47791794099048 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  4.39634414867723 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  4.00217276617164 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  3.99891866007599 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  3.98211391811154 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  3.97908815673888 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  3.97858487787769 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  3.91409799494188 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  3.89128503869358 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  3.86345398417242 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  3.32937863234927 bayes_pls_golite062009
  • ATPase activity
    		•  3.08226330066871 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  3.00619776756793 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.93295939960055 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.91418221359376 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.91133868200651 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  2.70116960945763 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  1.82526327874202 bayes_pls_golite062009
  • hydrolase activity
    		•  1.57867403354317 bayes_pls_golite062009
  • amine transmembrane transporter activity
    		•  1.35745015743741 bayes_pls_golite062009
  • secondary active transmembrane transporter activity
    		•  0.96228415837358 bayes_pls_golite062009
  • organic acid transmembrane transporter activity
    		•  0.86220210518613 bayes_pls_golite062009
  • carboxylic acid transmembrane transporter activity
    		•  0.851725653994868 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of ions
    		•  0.69074662322395 bayes_pls_golite062009
  • symporter activity
    		•  0.483541714040201 bayes_pls_golite062009
  • solute:cation symporter activity
    		•  0.483541714040201 bayes_pls_golite062009
  • catalytic activity
    		•  0.427775057748038 bayes_pls_golite062009
  • anion transmembrane transporter activity
    		•  0.38505555521505 bayes_pls_golite062009
  • sulfur amino acid transmembrane transporter activity
    		•  0.197768400248901 bayes_pls_golite062009
  • inorganic anion transmembrane transporter activity
    		•  0.171737154712589 bayes_pls_golite062009
  • sugar transmembrane transporter activity
    		•  0.149318428666465 bayes_pls_golite062009
  • metal ion transmembrane transporter activity
    		•  0.14639856424105 bayes_pls_golite062009
  • carbohydrate transmembrane transporter activity
    		•  0.0202682073710961 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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