YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24372854, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKLSFSSVM LWFGLLFLYA PMLILVIYSF NESKLVTVWG GFSPKWYGEL FKDQQILDAV  60
   61 WTSLRIAFYS STMAVIIGTM AAFVMTRFKR SWAKLTLSNM ITAPLVMPEV ITGLSLLLLF 120
  121 VHMADLLGWP KERGMVTVWI AHSTFCAAYV AVVVSSRLRE LDRSIEEAAM DLGATPLKTF 180
  181 FLITVPMISP ALVAGWLLSF SLSLDDLVIS SFASGPGATT LPMVVFSSVR LGVSPKINAL 240
  241 ATLIILCVSL IAFLSWYMAR RAEKRERMPL N

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	65	0.96
Transmembrane Helix	66	86	0.94
Cytoplasmic	87	100	0.83
Transmembrane Helix	101	124	0.85
Non-Cytoplasmic	125	137	0.84
Transmembrane Helix	138	158	0.90
Cytoplasmic	159	178	0.89
Transmembrane Helix	179	200	0.91
Non-Cytoplasmic	201	236	0.72
Transmembrane Helix	237	259	0.91
Cytoplasmic	260	271	0.71