YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|23297668, gi|...

General Information:
Name(s) found: gi|30697049 [NCBI NR]
gi|23297668 [NCBI NR]
gi|110740830 [NCBI NR]
Description(s) found:
SHOW ONLY BEST
  • gi|30697049|ref|NP_851214.1| malate dehydrogenase (NADP), chloroplast, putative [Arabidopsis thaliana] [NCBI NR]
  • gi|23297668|gb|AAN13004.1| NADP-dependent malate dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • gi|110740830|dbj|BAE98512.1| NADP-dependent malate dehydrogenase [Arabidopsis thaliana] [NCBI NR]
  • NADP-dependent malate dehydrogenase [Arabidopsis thaliana]gi|30697049|ref|NP_851214.1| malate dehydrogenase [NADP], chloroplast, putative [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Malate dehydrogenase (NADP) [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | malate dehydrogenase (NADP), chloroplast, putative | chr5:23597236-23599513 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • NADP-dependent malate dehydrogenase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • malate dehydrogenase/ oxidoreductase [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | lactate/malate dehydrogenase family protein | chr5:23580010-23582287 REVERSE LENGTH=443 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Lactate/malate dehydrogenase family protein OS=Arabidopsis thaliana GN=At5g58330 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 443 amino acids

    Gene Ontology:
    Cellular Component: chloroplast stroma [IDA]
    chloroplast [IDA]
    apoplast [IDA]
    mitochondrion [IDA]
    chloroplast envelope [IDA]
    thylakoid [IDA]
    Biological Process: carbohydrate metabolic process [IEA]
    malate metabolic process [IEA]
    metabolic process [IEA]
    Molecular Function: malate dehydrogenase activity [IEA][ISS]
    catalytic activity [IEA]
    oxidoreductase activity [IEA]
    malate dehydrogenase (NADP+) activity [IEA]
    binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ  60
   61 APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI NIAVSGAAGM ISNHLLFKLA 120
  121 SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI 180
  181 LIGAKPRGPG MERADLLDIN GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP 240
  241 NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV 300
  301 KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST 360
  361 GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY LRQRIAKSEA ELLAEKRCVA 420
  421 HLTGEGIAYC DLGPVDTMLP GEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..443] PSI-BLAST 117.0 Malate dehydrogenase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • malate dehydrogenase activity
    		•  7.69241456337154 bayes_pls_golite062009
  • L-malate dehydrogenase activity
    		•  3.86701960595079 bayes_pls_golite062009
  • malic enzyme activity
    		•  2.98382582538724 bayes_pls_golite062009
  • oxidoreductase activity
    		•  2.75947908917144 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  2.58076782195922 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.88605255677599 bayes_pls_golite062009
  • catalytic activity
    		•  1.67029398049886 bayes_pls_golite062009
  • NAD or NADH binding
    		•  1.32276254629683 bayes_pls_golite062009
  • alcohol dehydrogenase (NAD) activity
    		•  1.27032644348698 bayes_pls_golite062009
  • retinol dehydrogenase activity
    		•  1.16811519855038 bayes_pls_golite062009
  • L-lactate dehydrogenase activity
    		•  1.07211664452474 bayes_pls_golite062009
  • lactate dehydrogenase activity
    		•  0.836910434556944 bayes_pls_golite062009
  • alcohol dehydrogenase activity, zinc-dependent
    		•  0.729242797855749 bayes_pls_golite062009
  • coenzyme binding
    		•  0.59785037604907 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  0.527946013169731 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor
    		•  0.33551402794014 bayes_pls_golite062009
  • oxidoreductase activity, acting on NADH or NADPH
    		•  0.19685680097448 bayes_pls_golite062009
  • malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity
    		•  0.120195861875768 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.82

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle