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View Structure Prediction Details

Protein: gi|23297668, gi|...
Organism: Arabidopsis thaliana
Length: 443 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23297668, gi|....

Description E-value Query
Range
Subject
Range
gi|18377751 - gi|18377751|gb|AAL67025.1| putative NADP-dependent malate dehydrogenase [Arabidopsis thaliana]
476.0 [0..1] [443..1]

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Predicted Domain #1
Region A:
Residues: [1-443]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMAELSTPK TTSPFLNSSS RLRLSSKLHL SNHFRHLLLP PLHTTTPNSK ISCSVSQNSQ  60
   61 APVAVQENGL VKTKKECYGV FCLTYDLKAE EETRSWKKLI NIAVSGAAGM ISNHLLFKLA 120
  121 SGEVFGPDQP IALKLLGSER SIQALEGVAM ELEDSLFPLL REVDIGTDPN EVFQDVEWAI 180
  181 LIGAKPRGPG MERADLLDIN GQIFAEQGKA LNKAASPNVK VLVVGNPCNT NALICLKNAP 240
  241 NIPAKNFHAL TRLDENRAKC QLALKAGVFY DKVSNMTIWG NHSTTQVPDF LNARINGLPV 300
  301 KEVITDHKWL EEGFTESVQK RGGLLIQKWG RSSAASTAVS IVDAIKSLVT PTPEGDWFST 360
  361 GVYTDGNPYG IEEGLVFSMP CRSKGDGDYE LVKDVEIDDY LRQRIAKSEA ELLAEKRCVA 420
  421 HLTGEGIAYC DLGPVDTMLP GEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 117.0
Match: 1civA
Description: Malate dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
malate dehydrogenase activity 7.69241456337154 bayes_pls_golite062009
L-malate dehydrogenase activity 3.86701960595079 bayes_pls_golite062009
malic enzyme activity 2.98382582538724 bayes_pls_golite062009
oxidoreductase activity 2.75947908917144 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 2.58076782195922 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.88605255677599 bayes_pls_golite062009
catalytic activity 1.67029398049886 bayes_pls_golite062009
NAD or NADH binding 1.32276254629683 bayes_pls_golite062009
alcohol dehydrogenase (NAD) activity 1.27032644348698 bayes_pls_golite062009
retinol dehydrogenase activity 1.16811519855038 bayes_pls_golite062009
L-lactate dehydrogenase activity 1.07211664452474 bayes_pls_golite062009
lactate dehydrogenase activity 0.836910434556944 bayes_pls_golite062009
alcohol dehydrogenase activity, zinc-dependent 0.729242797855749 bayes_pls_golite062009
coenzyme binding 0.59785037604907 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.527946013169731 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor 0.33551402794014 bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH 0.19685680097448 bayes_pls_golite062009
malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity 0.120195861875768 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle