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Protein Overview: gi|18176246, gi|...

General Information:
Name(s) found: gi|22329645 [NCBI NR]
gi|22136930 [NCBI NR]
gi|18176246 [NCBI NR]
Description(s) found:
Found 11 descriptions.
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  • gi|22329645|ref|NP_173263.2| ketose-bisphosphate aldolase class-II family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|22136930|gb|AAM91809.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|18176246|gb|AAL60010.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1373 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA]
    Biological Process: pentose-phosphate shunt [IEA]
    glycolysis [IEA]
    metabolic process [IEA]
    valine metabolic process [IEA]
    Molecular Function: zinc ion binding [IEA]
    coenzyme binding [IEA]
    phosphogluconate dehydrogenase (decarboxylating) activity [IEA]
    oxidoreductase activity [IEA]
    catalytic activity [IEA]
    3-hydroxyisobutyrate dehydrogenase activity [IEA]
    binding [IEA]
    fructose-bisphosphate aldolase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVVGFVGL DSFSFELASS LLRSGFKVQA FEISTELVEK FIELGGHKCD SPADVGKAAA  60
   61 AVVVVLSHPD QIQDVIFGDE GVMKGLQKDA VLLLSSTIST LQLQKLEKQL TEKREQIFVV 120
  121 DAYVLKGMSE LLDGKLMIIA SGRSDSITRA QPYLTAMCQN LYTFEGEIGA GSKVKMVNEL 180
  181 LEGIHLVAAV EAISLGSQAG VHPWILYDII SNAAGNSWIY KNHIPLLLKD DIEGRFLDVL 240
  241 SQNLAIVEDK AKSLPFPVPL LAVARQQLIS GISQMQGDDT ATSLAKISEK VLGVGILEAA 300
  301 NRELYKPEDL AKEITTQAKP VNRIGFIGLG AMGFGMAAHL LKSNFSVCGY DVYKPTLVRF 360
  361 ENAGGLAANS PAEVTKDVDV LVIMVTNEVQ AEDVLYGHLG AVEAIPSGAT VVLASTVSPA 420
  421 FVSQLERRLE NEGKDLKLVD APVSGGVKRA AMGELTIMAS GTDEALKSAG LVLSALSEKL 480
  481 YVIKGGCGAG SGVKMVNQLL AGVHIASAAE AMAFGARLGL NTRKLFNVIS NSGGTSWMFE 540
  541 NRVPHMLDND YTPYSALDIF VKDLGIVTRE GSSRKVPLHI STVAHQLFLA GSAAGWGRID 600
  601 DAGVVKVYET LAGIKVEGRL PVLKKQDLLK SLPAEWPSDP TTDIHRLNMG NSKTLVVLDD 660
  661 DPTGTQTVHD VEVLTEWSVE SISEQFRKKP ACFFILTNSR SLSPEKASEL IKDICSNLCA 720
  721 ASKEVGNADY TIVLRGDSTL RGHFPQEADA AVSILGEMDA WIICPFFLQG GRYTIDDVHY 780
  781 VADSDRLVPA GETEFAKDAS FGYKSSNLRE WVEEKTAGVI PANSVQSISI QLLRKGGPDA 840
  841 VCEFLCSLKK GSTCIVNAAS ERDMAVFAAG MIQAELKGRS FLCRTAASFV SALIGIIPKD 900
  901 PVLPKDFESN KESSGALIVV GSYVPKTTKQ VEELQSQHNQ NLRSIEISVE KVALKSSEVR 960
  961 DEEIRRAVEM ADAFLRAGRE TLIMSSRELI TGKTSSESLD INSKVSSALV EVVSQISTRP1020
 1021 RYILAKGGIT SSDTATKALK ARRALVIGQA LAGVPVWKLG PESRHPGVPY IVFPGNVGNS1080
 1081 TALAEVVKSW SVVAGRSTKE LLLNAEKGGY AVGAFNVYNL EGIEAVVAAA EEENSPAILQ1140
 1141 VHPGAFKQGG IPLVSCCISA AEQARVPISV HFDHGTTKHE LLEALELGLD SVMVDGSHLS1200
 1201 FTENLSYTKS ITELARSKNI MVEAELGRLS GTEDGLTVED YEAKLTNVNQ AQEFMETGID1260
 1261 ALAVCIGNVH GKYPKSGPNL KLDLLKELHA LSSKKGVFLV LHGASGLSEN LIKECIENGV1320
 1321 RKFNVNTEVR TAYMEALSSG KKTDIVDVMS ATKAAMKAVI ADKIRLFGSA GKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..535] PSI-BLAST 11.221849 fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)
    2 View Details [536..614] PSI-BLAST 54.69897 X-RAY CRYSTAL STRUCTURE OF TARTRONATE SEMIALDEHYDE REDUCTASE [SALMONELLA TYPHIMURIUM LT2]
    3 View Details [615..760] FFAS03 3.06 CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE HYPOTHETICAL PROTEIN HI1011, NEW YORK STRUCTURAL GENOMICS CONSORTIUM
    4 View Details [761..1091] PSI-BLAST 93.0 CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE HYPOTHETICAL PROTEIN HI1011, NEW YORK STRUCTURAL GENOMICS CONSORTIUM
    5 View Details [1092..1373] PSI-BLAST 97.09691 Class II fructose-1,6-bisphosphate aldolase from Thermus aquaticus in complex with cobalt

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • oxidoreductase activity
    		•  3.09625241707629 bayes_pls_golite062009
  • ligase activity, forming carbon-carbon bonds
    		•  2.98357178864384 bayes_pls_golite062009
  • CoA carboxylase activity
    		•  2.96090226431291 bayes_pls_golite062009
  • methylcrotonoyl-CoA carboxylase activity
    		•  2.68509381558106 bayes_pls_golite062009
  • acetyl-CoA carboxylase activity
    		•  2.6620937018936 bayes_pls_golite062009
  • structural constituent of muscle
    		•  2.52378713234588 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.65338499044318 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  1.47309297191111 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors
    		•  1.38219425408212 bayes_pls_golite062009
  • S-(hydroxymethyl)glutathione dehydrogenase activity
    		•  1.31022230162074 bayes_pls_golite062009
  • retinol dehydrogenase activity
    		•  1.27546550701764 bayes_pls_golite062009
  • 3-hydroxyacyl-CoA dehydrogenase activity
    		•  1.07006097264025 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, transposing C=C bonds
    		•  1.06963918128891 bayes_pls_golite062009
  • propionyl-CoA carboxylase activity
    		•  1.03108042703379 bayes_pls_golite062009
  • malate dehydrogenase activity
    		•  0.63606663166401 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  0.527946013169731 bayes_pls_golite062009
  • enoyl-CoA hydratase activity
    		•  0.250698007650211 bayes_pls_golite062009
  • methylenetetrahydrofolate dehydrogenase activity
    		•  0.169301675015808 bayes_pls_golite062009
  • methenyltetrahydrofolate cyclohydrolase activity
    		•  0.162625185692811 bayes_pls_golite062009
  • binding
    		•  0.116896827329077 bayes_pls_golite062009
  • glyoxylate reductase activity
    		•  0.0221984076575323 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • transferase activity, transferring aldehyde or ketonic groups
    		•  3.48514072037683 bayes_pls_golite062009
  • fructose-bisphosphate aldolase activity
    		•  2.73042975776531 bayes_pls_golite062009
  • catalytic activity
    		•  2.67031204377352 bayes_pls_golite062009
  • 3-deoxy-7-phosphoheptulonate synthase activity
    		•  2.02591266233154 bayes_pls_golite062009
  • transaldolase activity
    		•  1.66628808988861 bayes_pls_golite062009
  • porphobilinogen synthase activity
    		•  1.26491064847364 bayes_pls_golite062009
  • 2-isopropylmalate synthase activity
    		•  1.25798621736763 bayes_pls_golite062009
  • lyase activity
    		•  0.740424046054758 bayes_pls_golite062009
  • carbon-carbon lyase activity
    		•  0.55793298895297 bayes_pls_golite062009
  • actin binding
    		•  0.557230957955544 bayes_pls_golite062009
  • aldehyde-lyase activity
    		•  0.351872954170322 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.31722916453797 bayes_pls_golite062009
  • binding
    		•  0.272760913965407 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  0.25728790872659 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle