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View Structure Prediction Details

Protein: gi|18176246, gi|...
Organism: Arabidopsis thaliana
Length: 1373 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18176246, gi|....

Description E-value Query
Range		 Subject
Range
gi|8671773 - gi|8671773|gb|AAF78379.1|AC069551_12 T10O22.24 [Arabidopsis thaliana]
 1043.0 [0..1] [1373..1]

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Predicted Domain #1
Region A:
Residues: [1-535] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVVGFVGL DSFSFELASS LLRSGFKVQA FEISTELVEK FIELGGHKCD SPADVGKAAA  60
   61 AVVVVLSHPD QIQDVIFGDE GVMKGLQKDA VLLLSSTIST LQLQKLEKQL TEKREQIFVV 120
  121 DAYVLKGMSE LLDGKLMIIA SGRSDSITRA QPYLTAMCQN LYTFEGEIGA GSKVKMVNEL 180
  181 LEGIHLVAAV EAISLGSQAG VHPWILYDII SNAAGNSWIY KNHIPLLLKD DIEGRFLDVL 240
  241 SQNLAIVEDK AKSLPFPVPL LAVARQQLIS GISQMQGDDT ATSLAKISEK VLGVGILEAA 300
  301 NRELYKPEDL AKEITTQAKP VNRIGFIGLG AMGFGMAAHL LKSNFSVCGY DVYKPTLVRF 360
  361 ENAGGLAANS PAEVTKDVDV LVIMVTNEVQ AEDVLYGHLG AVEAIPSGAT VVLASTVSPA 420
  421 FVSQLERRLE NEGKDLKLVD APVSGGVKRA AMGELTIMAS GTDEALKSAG LVLSALSEKL 480
  481 YVIKGGCGAG SGVKMVNQLL AGVHIASAAE AMAFGARLGL NTRKLFNVIS NSGGT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.221849
Match: 1wdkA
Description: fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
oxidoreductase activity 3.09625241707629 bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds 2.98357178864384 bayes_pls_golite062009
CoA carboxylase activity 2.96090226431291 bayes_pls_golite062009
methylcrotonoyl-CoA carboxylase activity 2.68509381558106 bayes_pls_golite062009
acetyl-CoA carboxylase activity 2.6620937018936 bayes_pls_golite062009
structural constituent of muscle 2.52378713234588 bayes_pls_golite062009
catalytic activity 1.79741889688267 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 1.65338499044318 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.47309297191111 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 1.38219425408212 bayes_pls_golite062009
S-(hydroxymethyl)glutathione dehydrogenase activity 1.31022230162074 bayes_pls_golite062009
retinol dehydrogenase activity 1.27546550701764 bayes_pls_golite062009
3-hydroxyacyl-CoA dehydrogenase activity 1.07006097264025 bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds 1.06963918128891 bayes_pls_golite062009
propionyl-CoA carboxylase activity 1.03108042703379 bayes_pls_golite062009
malate dehydrogenase activity 0.63606663166401 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.527946013169731 bayes_pls_golite062009
enoyl-CoA hydratase activity 0.250698007650211 bayes_pls_golite062009
methylenetetrahydrofolate dehydrogenase activity 0.169301675015808 bayes_pls_golite062009
methenyltetrahydrofolate cyclohydrolase activity 0.162625185692811 bayes_pls_golite062009
binding 0.116896827329077 bayes_pls_golite062009
glyoxylate reductase activity 0.0221984076575323 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [536-614] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWMFENRVPH MLDNDYTPYS ALDIFVKDLG IVTREGSSRK VPLHISTVAH QLFLAGSAAG  60
   61 WGRIDDAGVV KVYETLAGI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.69897
Match: 1vpdA
Description: X-RAY CRYSTAL STRUCTURE OF TARTRONATE SEMIALDEHYDE REDUCTASE [SALMONELLA TYPHIMURIUM LT2]
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [615-760] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVEGRLPVLK KQDLLKSLPA EWPSDPTTDI HRLNMGNSKT LVVLDDDPTG TQTVHDVEVL  60
   61 TEWSVESISE QFRKKPACFF ILTNSRSLSP EKASELIKDI CSNLCAASKE VGNADYTIVL 120
  121 RGDSTLRGHF PQEADAAVSI LGEMDA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.06
Match: 1yzyA
Description: CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE HYPOTHETICAL PROTEIN HI1011, NEW YORK STRUCTURAL GENOMICS CONSORTIUM
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [761-1091] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WIICPFFLQG GRYTIDDVHY VADSDRLVPA GETEFAKDAS FGYKSSNLRE WVEEKTAGVI  60
   61 PANSVQSISI QLLRKGGPDA VCEFLCSLKK GSTCIVNAAS ERDMAVFAAG MIQAELKGRS 120
  121 FLCRTAASFV SALIGIIPKD PVLPKDFESN KESSGALIVV GSYVPKTTKQ VEELQSQHNQ 180
  181 NLRSIEISVE KVALKSSEVR DEEIRRAVEM ADAFLRAGRE TLIMSSRELI TGKTSSESLD 240
  241 INSKVSSALV EVVSQISTRP RYILAKGGIT SSDTATKALK ARRALVIGQA LAGVPVWKLG 300
  301 PESRHPGVPY IVFPGNVGNS TALAEVVKSW S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 93.0
Match: 1yzyA
Description: CRYSTAL STRUCTURE OF HAEMOPHILUS INFLUENZAE HYPOTHETICAL PROTEIN HI1011, NEW YORK STRUCTURAL GENOMICS CONSORTIUM
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [1092-1373] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVAGRSTKEL LLNAEKGGYA VGAFNVYNLE GIEAVVAAAE EENSPAILQV HPGAFKQGGI  60
   61 PLVSCCISAA EQARVPISVH FDHGTTKHEL LEALELGLDS VMVDGSHLSF TENLSYTKSI 120
  121 TELARSKNIM VEAELGRLSG TEDGLTVEDY EAKLTNVNQA QEFMETGIDA LAVCIGNVHG 180
  181 KYPKSGPNLK LDLLKELHAL SSKKGVFLVL HGASGLSENL IKECIENGVR KFNVNTEVRT 240
  241 AYMEALSSGK KTDIVDVMSA TKAAMKAVIA DKIRLFGSAG KA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 97.09691
Match: 1rv8A
Description: Class II fructose-1,6-bisphosphate aldolase from Thermus aquaticus in complex with cobalt
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity, transferring aldehyde or ketonic groups 3.48514072037683 bayes_pls_golite062009
fructose-bisphosphate aldolase activity 2.73042975776531 bayes_pls_golite062009
catalytic activity 2.67031204377352 bayes_pls_golite062009
3-deoxy-7-phosphoheptulonate synthase activity 2.02591266233154 bayes_pls_golite062009
transaldolase activity 1.66628808988861 bayes_pls_golite062009
porphobilinogen synthase activity 1.26491064847364 bayes_pls_golite062009
2-isopropylmalate synthase activity 1.25798621736763 bayes_pls_golite062009
lyase activity 0.740424046054758 bayes_pls_golite062009
carbon-carbon lyase activity 0.55793298895297 bayes_pls_golite062009
actin binding 0.557230957955544 bayes_pls_golite062009
aldehyde-lyase activity 0.351872954170322 bayes_pls_golite062009
cytoskeletal protein binding 0.31722916453797 bayes_pls_golite062009
binding 0.272760913965407 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 0.25728790872659 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle