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Protein Overview: gi|218770683, gi...

General Information:
Name(s) found: gi|218890460 [NCBI NR]
gi|218770683 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|218890460|ref|YP_002439324.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa LESB58] [NCBI NR]
  • gi|218770683|emb|CAW26448.1| ATP-dependent DNA helicase RecQ [Pseudomonas aeruginosa LESB58] [NCBI NR]
    • Organism: Pseudomonas aeruginosa LESB58
    Length: 712 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREQALRILK DVFGYDAFRG NQARIIERVA EGGDALVLMP TGGGKSLCFQ VPALLREGLT  60
   61 VVVSPLIALM EDQVATLDEL GVPAVALNST LNPEQQRDIA ERLQRGEIKL LYLAPERLVQ 120
  121 PRMLAFLQRL PVGLFAIDEA HCVSQWGHDF RPEYLQLGQL AELFPQVPRI ALTATADMRT 180
  181 REEMIQRLHL QNAEQFLSSF DRPNIFYRIV PKEQPRKQLL GFLSERRGDA GIVYCLSRKK 240
  241 VEEVAEFLGN QGFPALPYHA GLSNELRAHH QKRFLNEEGL IMVATIAFGM GIDKPNVRFV 300
  301 AHLDLPKSLE AYYQETGRAG RDGLPADAWM AYGLQDVLLL RQMMQSSEGD ERHKRVERHK 360
  361 LEAMLALCEE TRCRRQALLA YFDEEMPQPC GHCDNCVDGV ETWDATESAR QALSAIYRSG 420
  421 QRYGVGHLVD ILLGRETEKI RSLGHQHLAV FGIGKGRGED EWRTLFRQLV ARGLADVDLD 480
  481 GFGGLRLTEA CRPLLRGEVR LELRRDLKPQ RAKGSSSGGA SAASQLVRSE EREMWEALRA 540
  541 LRRKLAEEHS VPPYVIFPDA TLLEMLRSQP RSLSDMAQVS GVGARKLERY GQAFLDVLTD 600
  601 SPAAPAAPPQ DLRHELASLA CAGMTPAQIA RQLNCSEKNV YAMLAEAIAG QQVSLEQALD 660
  661 LPEELLGEIQ DAFLEEDGEL PPVAALEERF GKRVPSGVLH CVRAALQVEL ES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..521] PSI-BLAST 119.0 Structure of the RecQ Catalytic Core
    2 View Details [522..605] PSI-BLAST 22.30103 E. coli RecQ HRDC domain
    3 View Details [606..712] FFAS03 1.23 Structure of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA helicase activity
    		•  5.33108843895592 bayes_pls_golite062009
  • four-way junction helicase activity
    		•  5.20361383647271 bayes_pls_golite062009
  • binding
    		•  2.64537357529343 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  2.16381244011837 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  2.13284212711072 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  2.11265775498161 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  2.11046854230259 bayes_pls_golite062009
  • single-stranded DNA-dependent ATPase activity
    		•  1.8195489846634 bayes_pls_golite062009
  • helicase activity
    		•  1.70242731830224 bayes_pls_golite062009
  • single-stranded DNA-dependent ATP-dependent DNA helicase activity
    		•  1.69315154404254 bayes_pls_golite062009
  • hydrolase activity
    		•  1.66122526893602 bayes_pls_golite062009
  • ATPase activity
    		•  1.53315090215319 bayes_pls_golite062009
  • RNA helicase activity
    		•  1.42791449104435 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.41477043612798 bayes_pls_golite062009
  • RNA-dependent ATPase activity
    		•  1.39335733374328 bayes_pls_golite062009
  • ATP-dependent RNA helicase activity
    		•  1.36724390116598 bayes_pls_golite062009
  • microtubule motor activity
    		•  1.30090199952739 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  1.2539059700735 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  1.2155186842031 bayes_pls_golite062009
  • purine NTP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • ATP-dependent helicase activity
    		•  1.19311444180077 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  1.117585097627 bayes_pls_golite062009
  • DNA binding
    		•  1.11699929651302 bayes_pls_golite062009
  • motor activity
    		•  1.03253378953548 bayes_pls_golite062009
  • catalytic activity
    		•  1.00104173493322 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.989226939888218 bayes_pls_golite062009
  • ATP-dependent DNA helicase activity
    		•  0.5886142102548 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.568457189190858 bayes_pls_golite062009
    		• 0.442119153778711 bayes_pls_golite062009
  • mismatched DNA binding
    		•  0.31144582840038 bayes_pls_golite062009
  • microfilament motor activity
    		•  0.2184107989371 bayes_pls_golite062009
  • exodeoxyribonuclease V activity
    		•  0.185603938981231 bayes_pls_golite062009
  • protein binding
    		•  0.170837278876362 bayes_pls_golite062009
  • nucleotide binding
    		•  0.114848452385726 bayes_pls_golite062009
  • purine nucleotide binding
    		•  0.10713474095071 bayes_pls_golite062009
  • purine ribonucleotide binding
    		•  0.0916519414118148 bayes_pls_golite062009
  • ribonucleotide binding
    		•  0.0915913646217636 bayes_pls_golite062009
  • transcription factor activity
    		•  0.0434163635422169 bayes_pls_golite062009
  • RNA binding
    		•  0.0261282189186349 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  3.76116210667531 bayes_pls_golite062009
  • DNA binding
    		•  3.39628628657785 bayes_pls_golite062009
  • DNA helicase activity
    		•  3.24220480567553 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.18445899869773 bayes_pls_golite062009
  • transcription factor activity
    		•  2.94565986317514 bayes_pls_golite062009
  • binding
    		•  2.92574888336072 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.86367079595277 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.61721996924599 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.52374123920114 bayes_pls_golite062009
  • transcription activator activity
    		•  0.82297417328567 bayes_pls_golite062009
  • protein binding
    		•  0.795494287543952 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.559482273209868 bayes_pls_golite062009
  • transcription factor binding
    		•  0.525225093153448 bayes_pls_golite062009
  • RNA binding
    		•  0.295100304833008 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  0.289642215056602 bayes_pls_golite062009
  • chromatin binding
    		•  0.18079392911406 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.177911729650997 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.149569950337217 bayes_pls_golite062009
  • double-stranded DNA binding
    		•  0.0110175210304684 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle