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Protein Overview: gi|42572929

General Information:
Name(s) found: gi|42572929 [NCBI NR]
Description(s) found:
Found 8 descriptions.
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  • gi|42572929|ref|NP_974561.1| ADA2B (HOMOLOG OF YEAST ADA2 2B); DNA binding / transcription coactivator/ transcription factor [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 486 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRSRGNFQN FEDPTQRTRK KKNAANVENF ESTSLVPGAE GGGKYNCDYC QKDITGKIRI  60
   61 KCAVCPDFDL CIECMSVGAE ITPHKCDHPY RVMGNLTFPL ICPDWSADDE MLLLEGLEIY 120
  121 GLGNWAEVAE HVGTKSKEQC LEHYRNIYLN SPFFPLPDMS HVAGKNRKEL QAMAKGRIDD 180
  181 KKEQNMKEEY PFSPPKVKVE DTQKESFVDR SFGGKKPVST SVNNSLVELS NYNQKREEFD 240
  241 PEYDNDAEQL LAEMEFKEND TPEEHELKLR VLRIYSKRLD ERKRRKEFII ERNLLYPNPF 300
  301 EKDLSQEEKV QCRRLDVFMR FHSKEEHDEL LRNVVSEYRM VKRLKDLKEA QVAGCRSTAE 360
  361 AERYLGRKRK RENEEGMNRG KESGQFGQIA GEMGSRPPVQ ASSSYVNDLD LIGFTESQLL 420
  421 SESEKRLCSE VKLVPPVYLQ MQQVMSHEIF KGNVTKKSDA YSLFKIDPTK VDRVYDMLVK 480
  481 KGIAQL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] FFAS03 2.91 No description for 2dipA was found.
    2 View Details [96..214] PSI-BLAST 18.39794 c-Myb, DNA-binding domain
    3 View Details [215..396] MSA 2.525995 View MSA. No confident structure predictions are available.
    4 View Details [397..486] PSI-BLAST 27.221849 Solution structure of SWIRM domain of mouse transcriptional adaptor 2-like

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • general RNA polymerase II transcription factor activity
    		•  5.89167912663142 bayes_pls_golite062009
  • binding
    		•  2.70912934275371 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.69310847474187 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.31493818053907 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  2.19099740571398 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  2.07850206021921 bayes_pls_golite062009
  • DNA binding
    		•  2.0126776192216 bayes_pls_golite062009
  • protein binding
    		•  1.48593945455888 bayes_pls_golite062009
  • transcription factor activity
    		•  1.23220438818624 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  1.21656984446301 bayes_pls_golite062009
  • transcription factor binding
    		•  0.987482369490121 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.876703944945945 bayes_pls_golite062009
  • ligase activity
    		•  0.497586458390942 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.283643164965801 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.190105232754922 bayes_pls_golite062009
  • catalytic activity
    		•  0.168711389690753 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.137379573046724 bayes_pls_golite062009
  • transcription activator activity
    		•  0.111490592727037 bayes_pls_golite062009
    2
    Term Confidence Notes
  • lysine N-acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  5.49431089902672 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.13863038737912 bayes_pls_golite062009
  • DNA binding
    		•  4.66369707598026 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.57418118498868 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.51452285155271 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.37954729923498 bayes_pls_golite062009
  • transcription factor activity
    		•  4.06706589695599 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.80908511328212 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.35206890637362 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.30532537006075 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.16896789933192 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.08442186629685 bayes_pls_golite062009
  • binding
    		•  3.02779747447702 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.41271657675151 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.91962622287073 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.85172306285414 bayes_pls_golite062009
  • transcription activator activity
    		•  1.77700860354597 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.73068440195944 bayes_pls_golite062009
  • chromatin binding
    		•  1.68956710349366 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • transcription factor binding
    		•  1.40653841901929 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23680480131205 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18932416576802 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.84983974758882 bayes_pls_golite062009
  • protein binding
    		•  0.830419844171551 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.666799964992178 bayes_pls_golite062009
  • histone binding
    		•  0.557787598121402 bayes_pls_golite062009
  • deacetylase activity
    		•  0.530687254192222 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.292409156157916 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.284650049512347 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.2679415219517 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.25931464844298 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.236060274498333 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.187022204923867 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.105174598157041 bayes_pls_golite062009
    3 No functions predicted.
    4
    Term Confidence Notes
  • lysine N-acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • histone acetyltransferase activity
    		•  5.80609397811031 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  5.49431089902672 bayes_pls_golite062009
  • transcription regulator activity
    		•  5.13863038737912 bayes_pls_golite062009
  • DNA binding
    		•  4.66369707598026 bayes_pls_golite062009
  • N-acyltransferase activity
    		•  4.57418118498868 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.51452285155271 bayes_pls_golite062009
  • N-acetyltransferase activity
    		•  4.37954729923498 bayes_pls_golite062009
  • transcription factor activity
    		•  4.06706589695599 bayes_pls_golite062009
  • acetyltransferase activity
    		•  3.80908511328212 bayes_pls_golite062009
  • acyltransferase activity
    		•  3.35206890637362 bayes_pls_golite062009
  • transferase activity, transferring acyl groups other than amino-acyl groups
    		•  3.30532537006075 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  3.16896789933192 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  3.08442186629685 bayes_pls_golite062009
  • binding
    		•  3.02779747447702 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  2.41271657675151 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.91962622287073 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.85172306285414 bayes_pls_golite062009
  • transcription activator activity
    		•  1.77700860354597 bayes_pls_golite062009
  • specific RNA polymerase II transcription factor activity
    		•  1.73068440195944 bayes_pls_golite062009
  • chromatin binding
    		•  1.68956710349366 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.4315541802752 bayes_pls_golite062009
  • transcription factor binding
    		•  1.40653841901929 bayes_pls_golite062009
  • protein deacetylase activity
    		•  1.23680480131205 bayes_pls_golite062009
  • histone deacetylase activity
    		•  1.18932416576802 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.84983974758882 bayes_pls_golite062009
  • protein binding
    		•  0.830419844171551 bayes_pls_golite062009
  • DNA-dependent ATPase activity
    		•  0.666799964992178 bayes_pls_golite062009
  • histone binding
    		•  0.557787598121402 bayes_pls_golite062009
  • deacetylase activity
    		•  0.530687254192222 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.292409156157916 bayes_pls_golite062009
  • telomeric DNA binding
    		•  0.284650049512347 bayes_pls_golite062009
  • transcription coactivator activity
    		•  0.2679415219517 bayes_pls_golite062009
  • transcription corepressor activity
    		•  0.25931464844298 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  0.236060274498333 bayes_pls_golite062009
  • DNA helicase activity
    		•  0.187022204923867 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.105174598157041 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle