Protein: | Nmdar2-PA, Nmdar... |
Organism: | Drosophila melanogaster |
Length: | 902 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Nmdar2-PA, Nmdar....
Description | E-value | Query Range |
Subject Range |
|
511.0 | [0..1] | [902..182] |
Region A: Residues: [1-440] |
1 11 21 31 41 51 | | | | | | 1 MMNNEQFGHS TASAQYFLQL AGYLGIPVIS WNADNSGLER RASQSTLQLQ LAPSIEHQSA 60 61 AMLSILERYK WHQFSVVTSQ IAGHDDFVQA VRERVAEMQE HFKFTILNSI VVTRTSDLME 120 121 LVNSEARVML LYATQTEAIT ILRAAEEMKL TGENYVWVVS QSVIEKKDAH SQFPVGMLGV 180 181 HFDTSSAALM NEISNAIKIY SYGVEAYLTD PANRDRRLTT QSLSCEDEGR GRWDNGEIFF 240 241 KYLRNVSIEG DLNKPNIEFT ADGDLRSAEL KIMNLRPSAN NKNLVWEEIG VWKSWETQKL 300 301 DIRDIAWPGN SHAPPQGVPE KFHLKITFLE EAPYINLSPA DPVSGKCLMD RGVLCRVAAD 360 361 HEMAADIDVG QAHRNESFYQ CCSGFCIDLL EKFAEELGFT YELVRVEDGK WGTLENGKWN 420 421 GLIADLVNRK TDMVLTSLMI |
Detection Method: | |
Confidence: | 37.69897 |
Match: | 2e4uA |
Description: | No description for 2e4uA was found. |
Region A: Residues: [441-506] |
1 11 21 31 41 51 | | | | | | 1 NTEREAVVDF SEPFMETGIA IVVAKRTGII SPTAFLEPFD TASWMLVGIV AIQAATFMIF 60 61 LFEWLS |
Detection Method: | |
Confidence: | 2.8 |
Match: | 1gggA |
Description: | Glutamine-binding protein |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [507-723] |
1 11 21 31 41 51 | | | | | | 1 PSGYDMKLYL QNTNVTPYRF SLFRTYWLVW AVLFQAAVHV DSPRGFTSRF MTNVWALFAV 60 61 VFLAIYTANL AAFMITREEF HEFSGLNDSR LVHPFSHKPS FKFGTIPYSH TDSTIHKYFN 120 121 VMHNYMRQYN KTSVADGVAA VLNGNLDSFI YDGTVLDYLV AQDEDCRLMT VGSWYAMTGY 180 181 GLAFSRNSKY VQMFNKRLLE FRANGDLERL RRYWMTG |
Detection Method: | |
Confidence: | 22.221849 |
Match: | 2a5sA |
Description: | Crystal Structure Of The NR2A Ligand Binding Core In Complex With Glutamate |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
amine binding | 4.11747486942823 | bayes_pls_golite062009 |
transporter activity | 3.92658561501282 | bayes_pls_golite062009 |
transmembrane transporter activity | 3.71430307970333 | bayes_pls_golite062009 |
substrate-specific transporter activity | 3.34421502810243 | bayes_pls_golite062009 |
primary active transmembrane transporter activity | 3.33883206510679 | bayes_pls_golite062009 |
P-P-bond-hydrolysis-driven transmembrane transporter activity | 3.33572158012752 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 3.31947078781945 | bayes_pls_golite062009 |
ATPase activity, coupled to transmembrane movement of substances | 3.3164655425684 | bayes_pls_golite062009 |
ATPase activity, coupled to movement of substances | 3.3159417475856 | bayes_pls_golite062009 |
active transmembrane transporter activity | 3.25041295044206 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 2.76254706952599 | bayes_pls_golite062009 |
ATPase activity, coupled | 2.65558937563899 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 2.36995601057551 | bayes_pls_golite062009 |
ATPase activity | 2.35388655037218 | bayes_pls_golite062009 |
pyrophosphatase activity | 2.29319753274625 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 2.27317031628667 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.27090852909065 | bayes_pls_golite062009 |
peptide binding | 2.13614935733644 | bayes_pls_golite062009 |
binding | 1.99193554770277 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 1.84929214408108 | bayes_pls_golite062009 |
receptor activity | 1.74349172783363 | bayes_pls_golite062009 |
molecular transducer activity | 1.44487216360172 | bayes_pls_golite062009 |
signal transducer activity | 1.44487216360172 | bayes_pls_golite062009 |
hydrolase activity | 0.999095648881488 | bayes_pls_golite062009 |
ATPase activity, coupled to transmembrane movement of ions | 0.88623763826001 | bayes_pls_golite062009 |
transcription regulator activity | 0.810341130332095 | bayes_pls_golite062009 |
protein binding | 0.782435650956845 | bayes_pls_golite062009 |
anion transmembrane transporter activity | 0.75669016367838 | bayes_pls_golite062009 |
catalytic activity | 0.674312982669564 | bayes_pls_golite062009 |
metal ion transmembrane transporter activity | 0.644907195402529 | bayes_pls_golite062009 |
transcription factor activity | 0.612192824804611 | bayes_pls_golite062009 |
DNA binding | 0.596947798194569 | bayes_pls_golite062009 |
inorganic anion transmembrane transporter activity | 0.555351218220589 | bayes_pls_golite062009 |
amine transmembrane transporter activity | 0.372828805396439 | bayes_pls_golite062009 |
nucleic acid binding | 0.367839087542125 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 0.343508026849565 | bayes_pls_golite062009 |
anion transmembrane-transporting ATPase activity | 0.149393758153546 | bayes_pls_golite062009 |
Region A: Residues: [724-809] |
1 11 21 31 41 51 | | | | | | 1 TCRPGKQEHK SSDPLALEQF LSAFLLLMAG ILLAALLLLL EHVYFKYIRK RLAKKDGGHC 60 61 CALISLSMGK SLTFRGAVFE ATEILK |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [810-902] |
1 11 21 31 41 51 | | | | | | 1 KHRCNDPICD THLWKVKHEL DMSRLRVRQL EKVMDKHGIK APQLRLASSS DLLNHHHLKE 60 61 RPPLLGNLSL AASAQDLYRW SYKTEIAEME TVL |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.