YRC Public Data Repository - Protein Structure Prediction

Protein:	GLNP_ECOLI
Organism:	Escherichia coli
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLNP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|29342814, gi\|... - gi\|29375354\|ref\|NP_814508.1\| amino acid ABC transporter, amino acid-binding/permease protein [Entero... gi\|227554876, gi... - gi\|227554876\|ref\|ZP_03984923.1\| amino acid ABC superfamily ATP binding cassette transporter protein ...	202.0	[0..6]	[217..512]
gi\|46880345, gi\|... - gi\|46907078\|ref\|YP_013467.1\| glutamine ABC transporter, permease/substrate-binding protein [Listeria... gi\|224503184 - gi\|224503184\|ref\|ZP_03671491.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|255520210 - gi\|255520210\|ref\|ZP_05387447.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|127632725, gi... - gi\|254832188\|ref\|ZP_05236843.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste...	194.0	[0..6]	[217..268]
gi\|254879962 - gi\|254879962\|ref\|ZP_05252672.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|254852338 - gi\|254852338\|ref\|ZP_05241686.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|254993068 - gi\|254993068\|ref\|ZP_05275258.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|47092054, gi\|... - gi\|47092054\|ref\|ZP_00229847.1\| glutamine ABC transporter, permease/substrate-binding protein [Lister... gi\|133735858, gi... - gi\|254931228\|ref\|ZP_05264587.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|153166167, gi... - gi\|153166167\|ref\|ZP_01926786.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|254823885 - gi\|254823885\|ref\|ZP_05228886.1\| Glutamine ABC transporter (binding and transport protein) [Listeria ... gi\|226223465, gi... - gi\|226223465\|ref\|YP_002757572.1\| Glutamine ABC transporter (binding and transport protein) [Listeria...	194.0	[0..6]	[217..268]
gi\|254935857 - gi\|254935857\|ref\|ZP_05267554.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|254898981, gi... - gi\|254898981\|ref\|ZP_05258905.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste... gi\|47016735, gi\|... - gi\|47094853\|ref\|ZP_00232467.1\| glutamine ABC transporter, permease/substrate-binding protein [Lister... gi\|127766174, gi... - gi\|254911531\|ref\|ZP_05261543.1\| glutamine ABC transporter, permease/substrate-binding protein [Liste...	194.0	[0..6]	[217..268]
gi\|62464008 - gi\|62464008\|ref\|ZP_00383312.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	194.0	[0..5]	[217..487]
gi\|76788581, gi\|... - gi\|76788581\|ref\|YP_330104.1\| polar amino acid ABC transporter permease/substrate-binding protein [St...	194.0	[0..6]	[217..511]
gi\|25011575, gi\|... - gi\|25011575\|ref\|NP_735970.1\| glutamine ABC transporter permease and substrate binding protein [Strep... gi\|22534494, gi\|... - gi\|22537609\|ref\|NP_688460.1\| glutamine ABC transporter, glutamine-binding protein/permease protein [... gi\|77176225, gi\|... - gi\|77405223\|ref\|ZP_00782321.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre... gi\|77414125, gi\|... - gi\|77414125\|ref\|ZP_00790292.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre... gi\|76587007, gi\|... - gi\|76797646\|ref\|ZP_00779916.1\| glutamine ABC transporter permease and substrate binding protein [Str...	194.0	[0..6]	[217..511]
gi\|16802888 - gi\|16802888\|ref\|NP_464373.1\| hypothetical protein lmo0847 [Listeria monocytogenes EGD-e] gi\|25516643, gi\|... - pir\|\|AG1180 Glutamine ABC transporter (binding and transport protein) homolog lmo0847 [imported] - L...	194.0	[0..6]	[217..268]
gi\|77411077, gi\|... - gi\|77411077\|ref\|ZP_00787431.1\| amino acid ABC transporter, amino acid-binding/permease protein [Stre...	194.0	[0..6]	[217..511]
gi\|24377179, gi\|... - gi\|24379263\|ref\|NP_721218.1\| putative glutamine ABC transporter, permease protein [Streptococcus mut...	194.0	[0..5]	[217..511]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFDWSAIWP AIPLLIEGAK MTLWISVLGL AGGLVIGLLA GFARTFGGWI ANHVALVFIE  60
   61 VIRGTPIVVQ VMFIYFALPM AFNDLRIDPF TAAVVTIMIN SGAYIAEITR GAVLSIHKGF 120
  121 REAGLALGLS RWETIRYVIL PLALRRMLPP LGNQWIISIK DTSLFIVIGV AELTRQGQEI 180
  181 IAGNFRALEI WSAVAVFYLI ITLVLSFILR RLERRMKIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.221849
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
transporter activity	4.47791794099048	bayes_pls_golite062009
transmembrane transporter activity	4.39634414867723	bayes_pls_golite062009
active transmembrane transporter activity	3.89128503869358	bayes_pls_golite062009
primary active transmembrane transporter activity	3.78071702105421	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	3.78024819585319	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	3.76710689838502	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	3.76480875126102	bayes_pls_golite062009
substrate-specific transporter activity	3.65928254714629	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.61840729006809	bayes_pls_golite062009
ATPase activity, coupled	3.13976951511862	bayes_pls_golite062009
ATPase activity	2.90304684848114	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.85886572725081	bayes_pls_golite062009
pyrophosphatase activity	2.78799656158331	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.76854894183109	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.76635806953632	bayes_pls_golite062009
ion transmembrane transporter activity	2.42886654788147	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	1.77292242910033	bayes_pls_golite062009
organic acid transmembrane transporter activity	1.77066316989042	bayes_pls_golite062009
cation transmembrane transporter activity	1.54974155411368	bayes_pls_golite062009
hydrolase activity	1.52360037846731	bayes_pls_golite062009
amine transmembrane transporter activity	1.35745015743741	bayes_pls_golite062009
secondary active transmembrane transporter activity	0.96228415837358	bayes_pls_golite062009
amino acid transmembrane transporter activity	0.702245581829122	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.69074662322395	bayes_pls_golite062009
catalytic activity	0.651599194564243	bayes_pls_golite062009
solute:cation symporter activity	0.483541714040201	bayes_pls_golite062009
symporter activity	0.483541714040201	bayes_pls_golite062009
anion transmembrane transporter activity	0.18066368771781	bayes_pls_golite062009
sugar transmembrane transporter activity	0.149318428666465	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.0202682073710961	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: