| Protein: | gi|23506023, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 613 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23506023, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
542.0 | [0..21] | [611..1079] |
|
Region A: Residues: [1-75] |
1 11 21 31 41 51
| | | | | |
1 MSSLTSVELN FLVFRYLQES GFTHAAFTLG YEAGINKSNI DGNMVPPGAL IKFVQKGLQY 60
61 MEMEANLSNS EVDID
|
| Detection Method: |  |
| Confidence: | 9.0 |
| Match: | 1uujA |
| Description: | N-terminal domain of Lissencephaly-1 protein (Lis-1) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [76-232] |
1 11 21 31 41 51
| | | | | |
1 EDFSFFQPLD LISKDVKELQ DMLREKKRKE RDMEKERDRS KENDKGVERE HEGDRNRAKE 60
61 KDRHEKQKER EREREKLERE KEREREKIER EKEREREKME REIFEREKDR LKLEKEREIE 120
121 REREREKIER EKSHEKQLGD ADREMVIDQT DKEIAGD
|
| Detection Method: | |
| Confidence: | 1.6 |
| Match: | 1rh1A |
| Description: | crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [233-305] |
1 11 21 31 41 51
| | | | | |
1 GSTGAEPMDI VMTPTSQTSH IPNSDVRILE GHTSEVCACA WSPSASLLAS GSGDATARIW 60
61 SIPEGSFKAV HTG
|
| Detection Method: | |
| Confidence: | 37.39794 |
| Match: | 1r5mA |
| Description: | Crystal Structure Of The C-Terminal WD40 Domain Of Sif2 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [306-613] |
1 11 21 31 41 51
| | | | | |
1 RNINALILKH AKGKSNEKSK DVTTLDWNGE GTLLATGSCD GQARIWTLNG ELISTLSKHK 60
61 GPIFSLKWNK KGDYLLTGSV DRTAVVWDVK AEEWKQQFEF HSGPTLDVDW RNNVSFATSS 120
121 TDSMIYLCKI GETRPAKTFT GHQGEVNCVK WDPTGSLLAS CSDDSTAKIW NIKQSTFVHD 180
181 LREHTKEIYT IRWSPTGPGT NNPNKQLTLA SASFDSTVKL WDAELGKMLC SFNGHREPVY 240
241 SLAFSPNGEY IASGSLDKSI HIWSIKEGKI VKTYTGNGGI FEVCWNKEGN KIAACFADNS 300
301 VCVLDFRM
|
| Detection Method: | |
| Confidence: | 84.522879 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 6.67009948605948 | bayes_pls_golite062009 | |
| histone methyltransferase activity (H3-K4 specific) | 4.71992275913384 | bayes_pls_golite062009 |
| myosin heavy chain kinase activity | 4.33124151198369 | bayes_pls_golite062009 |
| actin binding | 3.86142918698875 | bayes_pls_golite062009 |
| acetyltransferase activity | 3.85374902981345 | bayes_pls_golite062009 |
| RNA binding | 3.77273677738815 | bayes_pls_golite062009 |
| myosin II binding | 3.56132510021228 | bayes_pls_golite062009 |
| acyltransferase activity | 3.35098520158193 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups other than amino-acyl groups | 3.31615347567536 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 3.25521258308263 | bayes_pls_golite062009 |
| GTPase activity | 3.23750443966606 | bayes_pls_golite062009 |
| transferase activity, transferring acyl groups | 3.14917998298348 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.99343906593123 | bayes_pls_golite062009 |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| structural molecule activity | 2.6914565031145 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| translation initiation factor activity | 2.29806492548141 | bayes_pls_golite062009 |
| transcription repressor activity | 2.29049708962212 | bayes_pls_golite062009 |
| snoRNA binding | 2.27164613239345 | bayes_pls_golite062009 |
| protein binding | 2.26925404328312 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 2.10926890165617 | bayes_pls_golite062009 |
| actin filament binding | 2.0735069176589 | bayes_pls_golite062009 |
| dynactin binding | 1.92897254169098 | bayes_pls_golite062009 |
| histone methyltransferase activity | 1.85632145559025 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| receptor activity | 1.69781740346574 | bayes_pls_golite062009 |
| telomerase activity | 1.44665328127499 | bayes_pls_golite062009 |
| signal transducer activity | 1.42581655945599 | bayes_pls_golite062009 |
| molecular transducer activity | 1.42581655945599 | bayes_pls_golite062009 |
| transcription corepressor activity | 1.41752877005447 | bayes_pls_golite062009 |
| protein methyltransferase activity | 1.35170368882651 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| histone-lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| protein-lysine N-methyltransferase activity | 1.15313682561559 | bayes_pls_golite062009 |
| RNA-directed DNA polymerase activity | 1.10560669001943 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| mRNA binding | 1.05053985350578 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| myosin binding | 0.989691178611801 | bayes_pls_golite062009 |
| protein transporter activity | 0.964340340346761 | bayes_pls_golite062009 |
| type 1 angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| kinase activity | 0.807669232329985 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.805273887494167 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| histone binding | 0.685319917508843 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.676924760416604 | bayes_pls_golite062009 |
| transcription initiation factor activity | 0.656824577987243 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.634547834947756 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 0.625780732991652 | bayes_pls_golite062009 |
| protein kinase activity | 0.544118712921054 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| insulin receptor binding | 0.43316396073854 | bayes_pls_golite062009 |
| peptide binding | 0.387345823168967 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.28606552120995 | bayes_pls_golite062009 |
| DNA helicase activity | 0.220747580531792 | bayes_pls_golite062009 |
| chromatin binding | 0.151977098745772 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.0803897416817422 | bayes_pls_golite062009 |
| receptor binding | 0.0390635451962911 | bayes_pls_golite062009 |
| kinase binding | 0.0366162235750993 | bayes_pls_golite062009 |
| protein kinase binding | 0.00858004043229577 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
| N-methyltransferase activity | 0.00335766408304172 | bayes_pls_golite062009 |
