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View Structure Prediction Details

Protein: CLPC1_ARATH
Organism: Arabidopsis thaliana
Length: 929 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPC1_ARATH.

Description E-value Query
Range		 Subject
Range
gi|2921158, gi|2... - gi|2921158|gb|AAC04687.1| ClpC [Arabidopsis thaliana], pir||T52292 endopeptidase Clp (EC 3.4.21.92) ...
 690.0 [0..1] [929..1]

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Predicted Domain #1
Region A:
Residues: [1-88] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA  60
   61 LDTLGKSRQD FHSKVRQAMN VPKGKASR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 80.69897
Match: 1oz4A
Description: VCP/p97
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [89-929] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FTVKAMFERF TEKAIKVIML AQEEARRLGH NFVGTEQILL GLIGEGTGIA AKVLKSMGIN  60
   61 LKDARVEVEK IIGRGSGFVA VEIPFTPRAK RVLELSLEEA RQLGHNYIGS EHLLLGLLRE 120
  121 GEGVAARVLE NLGADPSNIR TQVIRMVGEN NEVTANVGGG SSSNKMPTLE EYGTNLTKLA 180
  181 EEGKLDPVVG RQPQIERVVQ ILGRRTKNNP CLIGEPGVGK TAIAEGLAQR IASGDVPETI 240
  241 EGKKVITLDM GLLVAGTKYR GEFEERLKKL MEEIRQSDEI ILFIDEVHTL IGAGAAEGAI 300
  301 DAANILKPAL ARGELQCIGA TTLDEYRKHI EKDPALERRF QPVKVPEPTV DETIQILKGL 360
  361 RERYEIHHKL RYTDESLVAA AQLSYQYISD RFLPDKAIDL IDEAGSRVRL RHAQVPEEAR 420
  421 ELEKELRQIT KEKNEAVRGQ DFEKAGTLRD REIELRAEVS AIQAKGKEMS KAESETGEEG 480
  481 PMVTESDIQH IVSSWTGIPV EKVSTDESDR LLKMEETLHK RIIGQDEAVK AISRAIRRAR 540
  541 VGLKNPNRPI ASFIFSGPTG VGKSELAKAL AAYYFGSEEA MIRLDMSEFM ERHTVSKLIG 600
  601 SPPGYVGYTE GGQLTEAVRR RPYTVVLFDE IEKAHPDVFN MMLQILEDGR LTDSKGRTVD 660
  661 FKNTLLIMTS NVGSSVIEKG GRRIGFDLDY DEKDSSYNRI KSLVTEELKQ YFRPEFLNRL 720
  721 DEMIVFRQLT KLEVKEIADI LLKEVFERLK KKEIELQVTE RFKERVVDEG YNPSYGARPL 780
  781 RRAIMRLLED SMAEKMLARE IKEGDSVIVD VDAEGNVTVL NGGSGTPTTS LEEQEDSLPV 840
  841 A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 147.0
Match: 1qvrA
Description: Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 3.36181317078971 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
binding 2.64537357529343 bayes_pls_golite062009
transporter activity 2.58140740499725 bayes_pls_golite062009
hydrolase activity 2.55157966585974 bayes_pls_golite062009
transmembrane transporter activity 2.39695871109024 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 2.32451967319952 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 2.20669061476179 bayes_pls_golite062009
ATPase activity, coupled 2.18396165590908 bayes_pls_golite062009
nucleic acid binding 2.11222585187695 bayes_pls_golite062009
DNA binding 1.7904783386531 bayes_pls_golite062009
transcription regulator activity 1.68903321260301 bayes_pls_golite062009
substrate-specific transporter activity 1.29730375126024 bayes_pls_golite062009
protein binding 1.22129154759482 bayes_pls_golite062009
catalytic activity 1.00104173493322 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.906554174337376 bayes_pls_golite062009
motor activity 0.87979065815418 bayes_pls_golite062009
structural constituent of ribosome 0.860102064846772 bayes_pls_golite062009
DNA-dependent ATPase activity 0.75383985982414 bayes_pls_golite062009
guanyl nucleotide binding 0.640772201693186 bayes_pls_golite062009
transcription activator activity 0.638755032892208 bayes_pls_golite062009
guanyl ribonucleotide binding 0.63468044350616 bayes_pls_golite062009
GTP binding 0.621689261700018 bayes_pls_golite062009
transcription factor activity 0.603758349693077 bayes_pls_golite062009
protein transporter activity 0.498432226280822 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ATP binding 0.41092997612902 bayes_pls_golite062009
adenyl ribonucleotide binding 0.385813421701492 bayes_pls_golite062009
adenyl nucleotide binding 0.377870145186619 bayes_pls_golite062009
ion transmembrane transporter activity 0.355466224802969 bayes_pls_golite062009
sequence-specific DNA binding 0.334630071828653 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
translation regulator activity 0.29096092258568 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.274994961137851 bayes_pls_golite062009
structure-specific DNA binding 0.229327589367146 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
DNA strand annealing activity 0.193867627809199 bayes_pls_golite062009
microtubule motor activity 0.11674780318211 bayes_pls_golite062009
structural molecule activity 0.11239762372728 bayes_pls_golite062009
cation transmembrane transporter activity 0.0254369227200564 bayes_pls_golite062009
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