| Protein: | CE17439 |
| Organism: | Caenorhabditis elegans |
| Length: | 644 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE17439.
| Description | E-value | Query Range |
Subject Range |
|
|
353.0 | [0..2] | [644..219] |
|
Region A: Residues: [1-330] |
1 11 21 31 41 51
| | | | | |
1 MVVEKYLEDE ELESFDIYPS GWTICKDILH DSFHRLLYFY VPFNSKYYYI WSFFVSFGVM 60
61 YNMFAMVIFI FADIKTQYFW NWIFLNVMFD MVFIVDIFVQ SRLTYLHEGE EVKNTKKLRK 120
121 NYFFQKLKVA NDIFCLLPLD FLLFFDDSMS LVLIRLMDFV QRTQQQTTFP RAFKIILLAV 180
181 SCIVLFHWNA CLYFLFSLYE GITEESQTEF GFSYYKVFEP VFPTCQAYYD ENCWFGEDID 240
241 HTLDLDDVRD SYKKEMAEYW KDKHYRWTTG NFSREYSMSI YWSALTITTC GQQPWPSTSS 300
301 QNSLEVFDTL IGVLVFATII GSWLPTQHKN
|
| Detection Method: |  |
| Confidence: | 5.39 |
| Match: | 2a0lA |
| Description: | Crystal structure of KvAP-33H1 Fv complex |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cation channel activity | 8.8271544979352 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 8.821528894161 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 8.74133052120115 | bayes_pls_golite062009 |
| ion channel activity | 8.5319589047463 | bayes_pls_golite062009 |
| gated channel activity | 8.44554798975713 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 8.43463411234305 | bayes_pls_golite062009 |
| voltage-gated channel activity | 8.4117395754193 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 8.36000486601638 | bayes_pls_golite062009 |
| channel activity | 8.32023913192244 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 8.32023913192244 | bayes_pls_golite062009 |
| substrate-specific channel activity | 8.30986502722514 | bayes_pls_golite062009 |
| potassium channel activity | 8.23401095904851 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 5.43467612453479 | bayes_pls_golite062009 |
| ligand-gated channel activity | 5.43467612453479 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 4.88789838906314 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 4.80939024913503 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 4.43208330555032 | bayes_pls_golite062009 |
| transporter activity | 2.77619896060397 | bayes_pls_golite062009 |
| inward rectifier potassium channel activity | 2.77094691956851 | bayes_pls_golite062009 |
| transmembrane transporter activity | 2.65613366364107 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.60593795082679 | bayes_pls_golite062009 |
|
Region A: Residues: [331-560] |
1 11 21 31 41 51
| | | | | |
1 SPKSEISGVG SVVTQMSQTV NEFRQMMDGI KFYMKYREVN SAIQERALSC FMYLMAHNQL 60
61 DDEEGILSLL PPRLQANIAA NLHMETLQNI QIFALCESRF MHEVVLLVKQ QVFSPNDYLC 120
121 RKNEKAKELF IVKKGKLRVI DDDTGEEMGE LTEGATFGEL SIVYVKGNLL GTRRCCSLQS 180
181 VGFSDIYVLY RDDVSRLLQE FPQEYKTIVM NARNLLHSRG LLETTELGEM
|
| Detection Method: | |
| Confidence: | 28.30103 |
| Match: | 1q3eA |
| Description: | HCN2J 443-645 in the presence of cGMP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cyclic nucleotide-gated ion channel activity | 10.1422916734545 | bayes_pls_golite062009 |
| intracellular cyclic nucleotide activated cation channel activity | 10.1422916734545 | bayes_pls_golite062009 |
| intracellular ligand-gated ion channel activity | 9.72053268940283 | bayes_pls_golite062009 |
| cation channel activity | 9.48749374439976 | bayes_pls_golite062009 |
| ion channel activity | 9.4846197809463 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 9.3929063879608 | bayes_pls_golite062009 |
| channel activity | 9.25176207085973 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 9.25176207085973 | bayes_pls_golite062009 |
| substrate-specific channel activity | 9.2472549851376 | bayes_pls_golite062009 |
| intracellular cGMP activated cation channel activity | 9.19973076787954 | bayes_pls_golite062009 |
| gated channel activity | 9.19042473454294 | bayes_pls_golite062009 |
| cGMP binding | 7.7575871125398 | bayes_pls_golite062009 |
| ligand-gated channel activity | 7.41584542512987 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 7.41584542512987 | bayes_pls_golite062009 |
| cyclic nucleotide binding | 7.37322432929433 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 6.57272328088253 | bayes_pls_golite062009 |
| voltage-gated channel activity | 6.54930851487319 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 5.54400173845933 | bayes_pls_golite062009 |
| GMP binding | 5.49455172024846 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 5.34760703274696 | bayes_pls_golite062009 |
| potassium channel activity | 5.29889968906368 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 5.1138025954757 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 4.96516802098805 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 4.52895684111035 | bayes_pls_golite062009 |
| intracellular cAMP activated cation channel activity | 3.95109938608832 | bayes_pls_golite062009 |
| transporter activity | 3.30740141256752 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 3.24402760485462 | bayes_pls_golite062009 |
| transmembrane transporter activity | 3.22443361822344 | bayes_pls_golite062009 |
| protein binding | 1.86347494944834 | bayes_pls_golite062009 |
| signal transducer activity | 1.7487659479534 | bayes_pls_golite062009 |
| molecular transducer activity | 1.7487659479534 | bayes_pls_golite062009 |
| binding | 1.59096092728475 | bayes_pls_golite062009 |
| transcription regulator activity | 1.52941414851886 | bayes_pls_golite062009 |
| enzyme regulator activity | 1.40720858109605 | bayes_pls_golite062009 |
| nucleic acid binding | 1.33862527414723 | bayes_pls_golite062009 |
| DNA binding | 1.17942022803543 | bayes_pls_golite062009 |
| GTPase regulator activity | 0.930640481652164 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 0.910527807644534 | bayes_pls_golite062009 |
| guanyl-nucleotide exchange factor activity | 0.848189810874263 | bayes_pls_golite062009 |
| transcription factor activity | 0.720377542376114 | bayes_pls_golite062009 |
| transcription activator activity | 0.659469524274627 | bayes_pls_golite062009 |
|
Region A: Residues: [561-644] |
1 11 21 31 41 51
| | | | | |
1 CDPSDHEEAD DLVLEEMSVV EQLNRLNGII DGLNGNMNVM ILSFSNSCSY YKQKITGLED 60
61 TFNQNREQIR SDFKNGLYID FIDY
|
| Detection Method: | |
| Confidence: | 27.522879 |
| Match: | 1i5zA |
| Description: | Catabolite gene activator protein (CAP), C-terminal domain; Catabolite gene activator protein, N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.51306541310201 | bayes_pls_golite062009 |
| DNA binding | 4.12876602944304 | bayes_pls_golite062009 |
| nucleic acid binding | 4.12610640813616 | bayes_pls_golite062009 |
| transcription factor activity | 3.36245551077648 | bayes_pls_golite062009 |
| binding | 2.88885372623841 | bayes_pls_golite062009 |
| transcription activator activity | 2.797376139366 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.67296989086846 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.67982218586786 | bayes_pls_golite062009 |
| signal transducer activity | 1.42015496657117 | bayes_pls_golite062009 |
| molecular transducer activity | 1.42015496657117 | bayes_pls_golite062009 |
| transcription repressor activity | 1.35320462873179 | bayes_pls_golite062009 |
