| Protein: | rfc4 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 342 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rfc4.
| Description | E-value | Query Range |
Subject Range |
|
|
236.0 | [0..17] | [342..511] |
|
|
229.0 | [0..4] | [342..17] |
|
|
227.0 | [0..5] | [337..25] |
|
|
227.0 | [0..6] | [337..19] |
|
|
225.0 | [0..17] | [342..29] |
|
|
225.0 | [0..5] | [338..1] |
|
|
224.0 | [0..2] | [337..15] |
|
|
223.0 | [0..5] | [332..15] |
|
|
223.0 | [0..5] | [337..18] |
|
|
223.0 | [0..2] | [337..14] |
|
Region A: Residues: [1-342] |
1 11 21 31 41 51
| | | | | |
1 MSNAVSSSVF GEKNNSVAYE LPWVEKYRPI VLDDIVGNEE TIDRLKVIAK EGNMPHLVIS 60
61 GMPGIGKTTS ILCLAHALLG PAYKEGVLEL NASDERGIDV VRNRIKAFAQ KKVILPPGRH 120
121 KIIILDEADS MTAGAQQALR RTMEIYSNTT RFALACNQSN KIIEPIQSRC AILRYSRLTD 180
181 QQVLQRLLNI CKAEKVNYTD DGLAALIMTA EGDMRQAVNN LQSTVAGFGL VNGENVFRVA 240
241 DQPSPVAIHA MLTACQSGNI DVALEKLQGI WDLGFSAVDI VTNMFRVVKT MDSIPEFSRL 300
301 EMLKEIGQTH MIILEGVQTL LQLSGLVCRL AKSQMKPESF II
|
| Detection Method: |  |
| Confidence: | 52.30103 |
| Match: | 1sxjB |
| Description: | Crystal Structure of the Eukaryotic Clamp Loader (Replication Factor C, RFC) Bound to the DNA Sliding Clamp (Proliferating Cell Nuclear Antigen, PCNA) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA clamp loader activity | 6.51495346697904 | bayes_pls_golite062009 |
| protein-DNA loading ATPase activity | 6.40748863504898 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 2.72462789867829 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| mismatched DNA binding | 2.51625633651862 | bayes_pls_golite062009 |
| DNA helicase activity | 2.2817164193758 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 1.88455339138556 | bayes_pls_golite062009 |
| 1.85506769032946 | bayes_pls_golite062009 | |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| guanine/thymine mispair binding | 1.69026972999845 | bayes_pls_golite062009 |
| DNA insertion or deletion binding | 1.68890613599528 | bayes_pls_golite062009 |
| RNA helicase activity | 1.63960194106079 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.61735400124552 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.60404584546501 | bayes_pls_golite062009 |
| nucleic acid binding | 1.49633029954726 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 1.21658213854831 | bayes_pls_golite062009 |
| ribonucleotide binding | 1.21652144153182 | bayes_pls_golite062009 |
| purine nucleotide binding | 1.21571071905795 | bayes_pls_golite062009 |
| nucleotide binding | 1.20347573865566 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| motor activity | 1.14667913749579 | bayes_pls_golite062009 |
| microtubule motor activity | 1.1277447806079 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription regulator activity | 0.989226939888218 | bayes_pls_golite062009 |
| DNA-directed DNA polymerase activity | 0.971476020912368 | bayes_pls_golite062009 |
| DNA binding | 0.967303417236485 | bayes_pls_golite062009 |
| DNA polymerase activity | 0.928091843881235 | bayes_pls_golite062009 |
| guanyl nucleotide binding | 0.656009904481476 | bayes_pls_golite062009 |
| guanyl ribonucleotide binding | 0.64416740142962 | bayes_pls_golite062009 |
| GTP binding | 0.643084645864898 | bayes_pls_golite062009 |
| single base insertion or deletion binding | 0.629563765934841 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.500462538667228 | bayes_pls_golite062009 |
| GTPase activity | 0.406399103964327 | bayes_pls_golite062009 |
| DNA strand annealing activity | 0.283577486331079 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.147579541298736 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.113504049290503 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.111293884322157 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.089234257580272 | bayes_pls_golite062009 |
| 3'-5' DNA helicase activity | 0.0769112340058804 | bayes_pls_golite062009 |
| transcription factor activity | 0.0434163635422169 | bayes_pls_golite062009 |
| lysine N-acetyltransferase activity | 0.0320943071400439 | bayes_pls_golite062009 |
| histone acetyltransferase activity | 0.0320943071400439 | bayes_pls_golite062009 |
| double-strand/single-strand DNA junction binding | 0.0136229525922795 | bayes_pls_golite062009 |
| actin binding | 0.00482938540552702 | bayes_pls_golite062009 |
