| Protein: | rdgA-PA |
| Organism: | Drosophila melanogaster |
| Length: | 1457 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rdgA-PA.
| Description | E-value | Query Range |
Subject Range |
|
|
1393.0 | [0..1] | [1445..1] |
|
Region A: Residues: [1-236] |
1 11 21 31 41 51
| | | | | |
1 MQQQQQPSID QLPEPTASTS NSATTKPTIA TATTSTTTTS GNNFHQQLQA TTAATMQRLR 60
61 TTFTRSRTPT GAEMKMQNSL EVPKQVRSAS FDEMQLESQR ASSSLLKQQS SSSASADERS 120
121 SEAGFLQVPL AAHQQRSHSF DSATASAGSD DSGTFLEVPR RLKARRSSST KTPPPCIHCH 180
181 YLEEYERRMT AEQRYFIDHR ELTALSYSNT SSEASEDEDE VEGHNAEEEE EGSAAI
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [237-519] |
1 11 21 31 41 51
| | | | | |
1 EDAEEETTEA ATEEADEDPR TEVESEHDHD PDDDAALEMD IRIGNMSQGS SIEESRARLP 60
61 RQMRRHTIGS SSVTSASEDE GLEGSDNGSP HFGNTLLPPQ PTTPCGITFT LSPTNGDYPS 120
121 PPHLPLDPGS PPISPCSSNS GRLPALAPII STPCSSADAD DAGAAMGLPV RARRRSISRQ 180
181 EAIFVEPTGN SLENVSHEEV DNSNTKSSVD TADSLDEAST MATCGSPGAA GGSGASSSHH 240
241 NAFVVRDIYL MVPDLKRDRA ASVDSCFSKL SSNAKTEELQ PSA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [520-723] |
1 11 21 31 41 51
| | | | | |
1 DGCFLTVPNI NATRSRSVDI VLPTDEQARY KALSMTGSTV TYADGRTASA SNSRRPIRIV 60
61 PDWTENAVQG EHYWKPTSAS GDLCCLNEEC IKSGQRMKCS ACQLVAHHNC IPFVNEKSTL 120
121 ACKPTYRDVG IRQYREQTTT HHHWVHRKLE KGKCKQCGKF FPMKQAVQSK LFGSKEIVAL 180
181 ACAWCHEIYH NKEACFNQAK IGEE
|
| Detection Method: | |
| Confidence: | 45.0 |
| Match: | 2i13A |
| Description: | No description for 2i13A was found. |
|
Region A: Residues: [724-808] |
1 11 21 31 41 51
| | | | | |
1 CRLGNYAPII VPPSWIVKLP TKGNFKSSIR VSNKNNAASG SGGGGAGGGA GGGGGKSKKQ 60
61 TQRRQKGKEE KKEPRAFIVK PIPSP
|
| Detection Method: | |
| Confidence: | 15.522879 |
| Match: | 1tf6A |
| Description: | Transcription factor IIIA, TFIIIA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 3.10743787485868 | bayes_pls_golite062009 |
| transcription regulator activity | 2.9286072149962 | bayes_pls_golite062009 |
| DNA binding | 2.91902554182176 | bayes_pls_golite062009 |
| nucleic acid binding | 2.79821688035927 | bayes_pls_golite062009 |
| transcription activator activity | 2.18185767124518 | bayes_pls_golite062009 |
| protein binding | 2.05530362750351 | bayes_pls_golite062009 |
| transcription factor activity | 2.01262882344347 | bayes_pls_golite062009 |
| transcription repressor activity | 1.81101516804605 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.39839669257043 | bayes_pls_golite062009 |
| chromatin binding | 1.30226466791538 | bayes_pls_golite062009 |
| receptor activity | 1.18834908971961 | bayes_pls_golite062009 |
| transcription factor binding | 1.1783268121342 | bayes_pls_golite062009 |
| signal transducer activity | 1.12277938241964 | bayes_pls_golite062009 |
| molecular transducer activity | 1.12277938241964 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.10244758181399 | bayes_pls_golite062009 |
| catalytic activity | 0.245893663605433 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.18282984873138 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0163653634078658 | bayes_pls_golite062009 |
|
Region A: Residues: [809-1093] |
1 11 21 31 41 51
| | | | | |
1 EVIPVIVFIN PKSGGNQGHK LLGKFQHLLN PRQVFDLTQG GPKMGLDMFR KAPNLRVLAC 60
61 GGDGTVGWVL SVLDQIQPPL QPAPAVGVLP LGTGNDLARA LGWGGGYTDE PIGKILREIG 120
121 MSQCVLMDRW RVKVTPNDDV TDDHVDRSKP NVPLNVINNY FSFGVDAHIA LEFHEAREAH 180
181 PERFNSRLRN KMYYGQMGGK DLILRQYRNL SQWVTLECDG QDFTGKLRDA GCHAVLFLNI 240
241 PSYGGGTHPW NDSFGASKPS IDDGLMEVVG LTTYQLPMLQ AGMHG
|
| Detection Method: | |
| Confidence: | 4.33 |
| Match: | 2bonA |
| Description: | No description for 2bonA was found. |
| Term | Confidence | Notes |
| kinase activity | 2.59626926900313 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 2.35052368075833 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 2.2931296299501 | bayes_pls_golite062009 |
| transferase activity | 1.54317668564469 | bayes_pls_golite062009 |
| lipid kinase activity | 0.740851164429992 | bayes_pls_golite062009 |
| catalytic activity | 0.342718239360125 | bayes_pls_golite062009 |
|
Region A: Residues: [1094-1457] |
1 11 21 31 41 51
| | | | | |
1 TCICQCRKAR IITKRTIPMQ VDGEACRVKP SVIEIELLNK ALMLSKRKHG RGDVQVNPLE 60
61 KMQLHILRVT MQQYEQYHYD KEMLRKLANK LGQIEIESQC DLEHVRNMLN TKFEESISYP 120
121 KVSQDWCFID SCTAEHYFRI DRAQEHLHYI CDIAIDELYI LDHEAATMPQ TPDQERSFAA 180
181 FSQRQAQNER RQMDQAQGRG PGSTDEDLQI GSKPIKVMKW KSPILEQTSD AILLAAQSGD 240
241 LNMLRALHEQ GYSLQSVNKN GQTALHFACK YNHRDIVKYI IASATRRLIN MADKELGQTA 300
301 LHIAAEQNRR DICVMLVAAG AHLDTLDSGG NTPMMVAFNK NANEIATYLE SKQGTQPVDG 360
361 WLDD
|
| Detection Method: | |
| Confidence: | 84.522879 |
| Match: | 1n11A |
| Description: | Ankyrin-R |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 2.69918165732603 | bayes_pls_golite062009 |
| binding | 2.60916417202222 | bayes_pls_golite062009 |
| molecular transducer activity | 1.2375987667709 | bayes_pls_golite062009 |
| signal transducer activity | 1.2375987667709 | bayes_pls_golite062009 |
| receptor activity | 1.22857731988464 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.1034434071611 | bayes_pls_golite062009 |
| transmembrane receptor activity | 1.10325771560525 | bayes_pls_golite062009 |
| kinase activity | 0.973206891506661 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.954469238725827 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.876784788207113 | bayes_pls_golite062009 |
| transcription factor binding | 0.84590123339816 | bayes_pls_golite062009 |
| substrate-specific channel activity | 0.74360198348535 | bayes_pls_golite062009 |
| protein kinase activity | 0.663511836722598 | bayes_pls_golite062009 |
| enzyme binding | 0.60140077251711 | bayes_pls_golite062009 |
| transcription regulator activity | 0.589753112911856 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 0.556885542399749 | bayes_pls_golite062009 |
| channel activity | 0.556885542399749 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.5337972579854 | bayes_pls_golite062009 |
| ion channel activity | 0.40517082975613 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.3210142108162 | bayes_pls_golite062009 |
| transferase activity | 0.298084176742023 | bayes_pls_golite062009 |
| transcription activator activity | 0.295016294965448 | bayes_pls_golite062009 |
| gated channel activity | 0.28982824879439 | bayes_pls_golite062009 |
| cation channel activity | 0.2321216453051 | bayes_pls_golite062009 |
| DNA binding | 0.139886855398905 | bayes_pls_golite062009 |
| transcription repressor activity | 0.108244697820437 | bayes_pls_golite062009 |
| nucleic acid binding | 0.106792084948545 | bayes_pls_golite062009 |
| mechanically gated channel activity | 0.0507470076143287 | bayes_pls_golite062009 |
| mechanically-gated ion channel activity | 0.0507470076143287 | bayes_pls_golite062009 |
| nucleoside-triphosphatase regulator activity | 0.0018080615624233 | bayes_pls_golite062009 |
| actin binding | 6.04689889151855E-4 | bayes_pls_golite062009 |
