| Protein: | Dscam-PBG |
| Organism: | Drosophila melanogaster |
| Length: | 2031 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Dscam-PBG.
| Description | E-value | Query Range |
Subject Range |
|
|
1532.0 | [0..17] | [2031..17] |
|
Region A: Residues: [1-138] |
1 11 21 31 41 51
| | | | | |
1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE 60
61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
121 NQFGSIISRD VHVRAVVN
|
| Detection Method: |  |
| Confidence: | 78.154902 |
| Match: | 2v5sA |
| Description: | No description for 2v5sA was found. |
|
Region A: Residues: [139-246] |
1 11 21 31 41 51
| | | | | |
1 QYYEAEVVSE YVIRGNTAVL KCTIPSFVAD FLRVEAWVAS DGTEYAPEED FDGKYLVLPS 60
61 GELHIREVGP EDGYKSYQCR TKHRLTGETR LSATKGRLVI TEPVASVP
|
| Detection Method: | |
| Confidence: | 13.09691 |
| Match: | 2gkiA |
| Description: | No description for 2gkiA was found. |
|
Region A: Residues: [247-909] |
1 11 21 31 41 51
| | | | | |
1 PKLNLLERVR TMEVSVGTKY AMQCPGQAFP VPINRWYKFI EGTTRKQAVV LNDRVKQVSG 60
61 TLIIKDAVVE DSGKYLCVVN NSVGGESVET VLTVTAPLSA KIDPPTQTVD FGRPAVFTCQ 120
121 YTGNPIKTVS WMKDGKAIGH SEPVLRIESV KKEDKGMYQC FVRNDQESAE ASAELKLGGR 180
181 FDPPVIRQAF QEETMEPGPS VFLKCVAGGN PTPEISWELD GKKIANNDRY QVGQYVTVNG 240
241 DVVSYLNITS VHANDGGLYK CIAKSKVGVA EHSAKLNVYG LPYIRQMEKK AIVAGETLIV 300
301 TCPVAGYPID SIVWERDNRA LPINRKQKVF PNGTLIIENV ERNSDQATYT CVAKNQEGYS 360
361 ARGSLEVQVM VLPQVVPFDF GEESINELDM VSASCTVNKG DLPVDIYWTK NGGRVYTNDG 420
421 LIVTRNSQRL SVLSIESVRA RHAGNYSCVA TNNAGAITQS AMLAVNVPPR WILEPTDKAF 480
481 AQGSDAKVEC KADGFPKPQV TWKKAVGDTP GEYKDLKKSD NIRVEEGTLH VDNIQKTNEG 540
541 YYLCEAINGI GSGLSAVIMI SVQAPPEFTE KLRNQTARRG EPAVLQCEAK GEKPIGILWN 600
601 MNNMRLDPKN DNRYTIREEI LSTGVMSSLS IKRTERSDSA LFTCVATNAF GSDDASINMI 660
661 VQE
|
| Detection Method: | |
| Confidence: | 59.09691 |
| Match: | 1e07A |
| Description: | Model of human carcinoembryonic antigen by homology modelling and curve-fitting to experimental solution scattering data |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [910-1006] |
1 11 21 31 41 51
| | | | | |
1 VPEMPYALKV LDKSGRSVQL SWAQPYDGNS PLDRYIIEFK RSRASWSEID RVIVPGHTTE 60
61 AQVQKLSPAT TYNIRIVAEN AIGTSQSSEA VTIITAE
|
| Detection Method: | |
| Confidence: | 37.0 |
| Match: | 2nziA |
| Description: | No description for 2nziA was found. |
|
Region A: Residues: [1007-1113] |
1 11 21 31 41 51
| | | | | |
1 EAPSGKPQNI KVEPVNQTTM RVTWKPPPRT EWNGEILGYY VGYKLSNTNS SYVFETINFI 60
61 TEEGKEHNLE LQNLRVYTQY SVVIQAFNKI GAGPLSEEEK QFTAEGT
|
| Detection Method: | |
| Confidence: | 10.69897 |
| Match: | 2edxA |
| Description: | No description for 2edxA was found. |
|
Region A: Residues: [1114-1477] |
1 11 21 31 41 51
| | | | | |
1 PSQPPSDTAC TTLTSQTIRV GWVSPPLESA NGVIKTYKVV YAPSDEWYDE TKRHYKKTAS 60
61 SDTVLHGLKK YTNYTMQVLA TTAGGDGVRS VPIHCQTEPD VPEAPTDVKA LVMGNAAILV 120
121 SWRPPAQPNG IITQYTVYSK AEGAETETKT QKVPHYQMSF EATELEKNKP YEFWVTASTT 180
181 IGEGQQSKSI VAMPSDQVPA KIASFDDTFT ATFKEDAKMP CLAVGAPQPE ITWKIKGVEF 240
241 SANDRMRVLP DGSLLIKSVN RQDAGDYSCH AENSIAKDSI THKLIVLAPP QSPHVTLSAT 300
301 TTDALTVKLK PHEGDTAPLH GYTLHYKPEF GEWETSEVSV DSQKHNIEGL LCGSRYQVYA 360
361 TGFN
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 1zlgA |
| Description: | No description for 1zlgA was found. |
|
Region A: Residues: [1478-1595] |
1 11 21 31 41 51
| | | | | |
1 NIGAGEASDI LNTRTKGQKP KLPEKPRFIE VSSNSVSLHF KAWKDGGCPM SHFVVESKKR 60
61 DQIEWNQISN NVKPDNNYVV LDLEPATWYN LRITAHNSAG FTVAEYDFAT LTVTGGTI
|
| Detection Method: | |
| Confidence: | 12.0 |
| Match: | 1x5kA |
| Description: | The solution structure of the sixth fibronectin type III domain of human Neogenin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| telethonin binding | 5.81747667416248 | bayes_pls_golite062009 |
| structural constituent of muscle | 5.71979489668015 | bayes_pls_golite062009 |
| transmembrane receptor activity | 4.81256300373074 | bayes_pls_golite062009 |
| ankyrin binding | 4.69755754047169 | bayes_pls_golite062009 |
| receptor activity | 4.66147271961356 | bayes_pls_golite062009 |
| alpha-actinin binding | 4.57951951779666 | bayes_pls_golite062009 |
| actinin binding | 4.57900103206288 | bayes_pls_golite062009 |
| cytokine binding | 4.43581512268554 | bayes_pls_golite062009 |
| cytokine receptor activity | 4.08668869714207 | bayes_pls_golite062009 |
| growth factor binding | 4.06808996928726 | bayes_pls_golite062009 |
| molecular transducer activity | 3.69234048247377 | bayes_pls_golite062009 |
| signal transducer activity | 3.69234048247377 | bayes_pls_golite062009 |
| extracellular matrix structural constituent | 3.5949595622742 | bayes_pls_golite062009 |
| protein binding | 3.24522318184038 | bayes_pls_golite062009 |
| binding | 3.12471204223368 | bayes_pls_golite062009 |
| receptor binding | 2.38673889309915 | bayes_pls_golite062009 |
| interleukin-2 binding | 2.38131482184802 | bayes_pls_golite062009 |
| cell adhesion molecule binding | 2.32179186005318 | bayes_pls_golite062009 |
| peptide hormone binding | 2.12033076929638 | bayes_pls_golite062009 |
| axon guidance receptor activity | 2.01367445237355 | bayes_pls_golite062009 |
| interleukin-6 binding | 1.9781930293417 | bayes_pls_golite062009 |
| interleukin-6 receptor activity | 1.9781930293417 | bayes_pls_golite062009 |
| prolactin receptor activity | 1.9556649101819 | bayes_pls_golite062009 |
| mercury ion binding | 1.85843060232985 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.85720106085239 | bayes_pls_golite062009 |
| glycosaminoglycan binding | 1.56410665522466 | bayes_pls_golite062009 |
| myosin light chain kinase activity | 1.49217960276915 | bayes_pls_golite062009 |
| protein kinase activity | 1.42856560840953 | bayes_pls_golite062009 |
| cytokine receptor binding | 1.37111932405391 | bayes_pls_golite062009 |
| nucleic acid binding | 1.32813363771214 | bayes_pls_golite062009 |
| transcription regulator activity | 1.31663344632755 | bayes_pls_golite062009 |
| ciliary neurotrophic factor receptor activity | 1.27192437373177 | bayes_pls_golite062009 |
| actin binding | 1.21472460452555 | bayes_pls_golite062009 |
| DNA binding | 1.2006039770643 | bayes_pls_golite062009 |
| growth hormone receptor activity | 1.15929762138929 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 1.15899955607967 | bayes_pls_golite062009 |
| heparin binding | 1.15000556789505 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 1.12142142875217 | bayes_pls_golite062009 |
| kinase activity | 1.11027658115625 | bayes_pls_golite062009 |
| cytokine activity | 1.09433218752101 | bayes_pls_golite062009 |
| interleukin-7 binding | 0.992216255634359 | bayes_pls_golite062009 |
| structural molecule activity | 0.94240190391222 | bayes_pls_golite062009 |
| peptide binding | 0.92031154055894 | bayes_pls_golite062009 |
| protein dimerization activity | 0.86564366658585 | bayes_pls_golite062009 |
| interleukin-2 receptor activity | 0.817385502041609 | bayes_pls_golite062009 |
| interleukin-11 receptor activity | 0.721156833238761 | bayes_pls_golite062009 |
| interleukin-11 binding | 0.721156833238761 | bayes_pls_golite062009 |
| protein serine/threonine kinase activity | 0.703490254739121 | bayes_pls_golite062009 |
| kinase binding | 0.65927255037265 | bayes_pls_golite062009 |
| leukemia inhibitory factor receptor activity | 0.628488391922279 | bayes_pls_golite062009 |
| oncostatin-M receptor activity | 0.628488391922279 | bayes_pls_golite062009 |
| enzyme binding | 0.60195860585095 | bayes_pls_golite062009 |
| collagen binding | 0.593745877718282 | bayes_pls_golite062009 |
| identical protein binding | 0.564711394496051 | bayes_pls_golite062009 |
| transcription factor activity | 0.557290274937694 | bayes_pls_golite062009 |
| transmembrane receptor protein tyrosine kinase activity | 0.554350228628563 | bayes_pls_golite062009 |
| polysaccharide binding | 0.54737137289904 | bayes_pls_golite062009 |
| hormone binding | 0.49524185948356 | bayes_pls_golite062009 |
| transmembrane receptor protein kinase activity | 0.46168925186147 | bayes_pls_golite062009 |
| pattern binding | 0.44460010885883 | bayes_pls_golite062009 |
| growth factor activity | 0.432629984792427 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.40600177052491 | bayes_pls_golite062009 |
| protein kinase binding | 0.405060010394646 | bayes_pls_golite062009 |
| cell surface binding | 0.366415248711076 | bayes_pls_golite062009 |
| ciliary neurotrophic factor receptor binding | 0.338520586013721 | bayes_pls_golite062009 |
| protein heterodimerization activity | 0.1430595594485 | bayes_pls_golite062009 |
| transcription activator activity | 0.135753557343301 | bayes_pls_golite062009 |
| actin filament binding | 0.135484838710405 | bayes_pls_golite062009 |
| protease binding | 0.12595904253108 | bayes_pls_golite062009 |
| protein homodimerization activity | 0.116391819218123 | bayes_pls_golite062009 |
| integrin binding | 0.0873424694168858 | bayes_pls_golite062009 |
| transcription factor binding | 0.075900818564989 | bayes_pls_golite062009 |
|
Region A: Residues: [1596-1860] |
1 11 21 31 41 51
| | | | | |
1 APLDDGSGHG NVHTRIRLPA WMPEWLDLNF MVPLIATVVV VAVGICVVCV ALSRRRADDM 60
61 RGGQKDVYYD VVYNQTMGPG ATLDKRRPDL RDELGYIAPP NRKLPPVPGS NYNTCDRIKR 120
121 GRGGLRSNHS TWDPRRNPNL YEELKAPPVP MHGNHYGHAH GNAECHYRHP GMEDEICPYA 180
181 TFHLLGFREE MDPTKAMNFQ TFPHQNGHAG PVPGHAGTML PPGHPGHVHS RSGSQSMPRA 240
241 NRYQRKNSQG GQSSIYTPAP EYDDP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1861-2031] |
1 11 21 31 41 51
| | | | | |
1 ANCAEEDQYR RYTRVNSQGG SLYSGPGPEY DDPANCAPEE DQYGSQYGGP YGQPYDHYGS 60
61 RGSMGRRSIG SARNPGNGSP EPPPPPPRNH DMSNSSFNDS KESNEISEAE CDRDHGPRGN 120
121 YGAVKRSPQP KDQRTTEEMR KLIERNETGP KQLQLQQANG AGFTAYDTMA V
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
