| Protein: | USP11 |
| Organism: | Homo sapiens |
| Length: | 963 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for USP11.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..963] | [1..963] |
|
|
0.0 | [33..963] | [1..931] |
|
|
0.0 | [65..963] | [25..923] |
|
|
0.0 | [1..963] | [1..952] |
|
|
0.0 | [66..963] | [18..921] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MAVAPRLFGG LCFRFRDQNP EVAVEGRLPI SHSCVGCRRE RTAMATVAAN PAAAAAAVAA 60
61 AAAVTEDREP QHEELPGLDS QWRQIENGES GRERPLRAGE SWFLVEKHWY KQWEAYVQGG 120
121 DQDSSTFPGC INNATLFQDE INWRLKEGLV EGEDYVLLPA AAWHYLVSWY GLEHGQPPIE 180
181 RKVIELP
|
| Detection Method: |  |
| Confidence: | 30.39794 |
| Match: | 1w6vA |
| Description: | Solution structure of the DUSP domain of hUSP15 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 3.69173405245576 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 3.43109370848144 | bayes_pls_golite062009 |
| endopeptidase activity | 2.75397594334424 | bayes_pls_golite062009 |
| hydrolase activity | 2.73447072772242 | bayes_pls_golite062009 |
| binding | 2.43973746940455 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 2.03076448806511 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.33423779714503 | bayes_pls_golite062009 |
| protein binding | 1.14776614585261 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 0.95030254676609 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.72977635292048 | bayes_pls_golite062009 |
| catalytic activity | 0.639120026974844 | bayes_pls_golite062009 |
|
Region A: Residues: [188-289] |
1 11 21 31 41 51
| | | | | |
1 NIQKVEVYPV ELLLVRHNDL GKSHTVQFSH TDSIGLVLRT ARERFLVEPQ EDTRLWAKNS 60
61 EGSLDRLYDT HITVLDAALE TGQLIIMETR KKDGTWPSAQ LH
|
| Detection Method: | |
| Confidence: | 1.51 |
| Match: | 1v5oA |
| Description: | Solution Structure of the Ubiquitin-like Domain from Mouse Hypothetical 1700011N24Rik Protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.11588141989606 | bayes_pls_golite062009 |
| hydrolase activity | 1.71270780201188 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 1.64626529520014 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 1.03640529353043 | bayes_pls_golite062009 |
| protein binding | 1.03325409251792 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.778769490362734 | bayes_pls_golite062009 |
| nucleic acid binding | 0.406724367405638 | bayes_pls_golite062009 |
| DNA binding | 0.102021710653816 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0672274772804511 | bayes_pls_golite062009 |
|
Region A: Residues: [290-657] |
1 11 21 31 41 51
| | | | | |
1 VMNNNMSEED EDFKGQPGIC GLTNLGNTCF MNSALQCLSN VPQLTEYFLN NCYLEELNFR 60
61 NPLGMKGEIA EAYADLVKQA WSGHHRSIVP HVFKNKVGHF ASQFLGYQQH DSQELLSFLL 120
121 DGLHEDLNRV KKKEYVELCD AAGRPDQEVA QEAWQNHKRR NDSVIVDTFH GLFKSTLVCP 180
181 DCGNVSVTFD PFCYLSVPLP ISHKRVLEVF FIPMDPRRKP EQHRLVVPKK GKISDLCVAL 240
241 SKHTGISPER MMVADVFSHR FYKLYQLEEP LSSILDRDDI FVYEVSGRIE AIEGSREDIV 300
301 VPVYLRERTP ARDYNNSYYG LMLFGHPLLV SVPRDRFTWE GLYNVLMYRL SRYVTKPNSD 360
361 DEDDGDEK
|
| Detection Method: | |
| Confidence: | 61.0 |
| Match: | 2gfoA |
| Description: | No description for 2gfoA was found. |
|
Region A: Residues: [658-963] |
1 11 21 31 41 51
| | | | | |
1 EDDEEDKDDV PGPSTGGSLR DPEPEQAGPS SGVTNRCPFL LDNCLGTSQW PPRRRRKQLF 60
61 TLQTVNSNGT SDRTTSPEEV HAQPYIAIDW EPEMKKRYYD EVEAEGYVKH DCVGYVMKKA 120
121 PVRLQECIEL FTTVETLEKE NPWYCPSCKQ HQLATKKLDL WMLPEILIIH LKRFSYTKFS 180
181 REKLDTLVEF PIRDLDFSEF VIQPQNESNP ELYKYDLIAV SNHYGGMRDG HYTTFACNKD 240
241 SGQWHYFDDN SVSPVNENQI ESKAAYVLFY QRQDVARRLL SPAGSSGAPA SPACSSPPSS 300
301 EFMDVN
|
| Detection Method: | |
| Confidence: | 40.045757 |
| Match: | 1nb8A |
| Description: | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidase activity | 4.81781093386823 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 4.44809261178642 | bayes_pls_golite062009 |
| hydrolase activity | 3.74079711298952 | bayes_pls_golite062009 |
| endopeptidase activity | 3.37014194828197 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 3.05412701733177 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 1.71956723967893 | bayes_pls_golite062009 |
| binding | 1.3276268995308 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.16758945018031 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| thiolester hydrolase activity | 0.86592833690416 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 0.495368836247989 | bayes_pls_golite062009 |
| nucleic acid binding | 0.439226369799415 | bayes_pls_golite062009 |
| kininogen binding | 0.41283715939055 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| protein binding | 0.177568040298733 | bayes_pls_golite062009 |
| DNA binding | 0.168761518285256 | bayes_pls_golite062009 |
