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View Structure Prediction Details

Protein: CIN8
Organism: Saccharomyces cerevisiae
Length: 1000 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIN8.

Description E-value Query
Range
Subject
Range
gi|27882435 - gi|27882435|gb|AAH44720.1| Kif3a protein [Mus musculus]
5.0E-57 [23..405] [1..375]
gi|17942987 - gi|17942987|pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And I...
2.0E-56 [31..398] [2..353]
gi|116283753, gi... - gi|27370706|gb|AAH39592.1| Unknown (protein for IMAGE:5403936) [Homo sapiens], gi|116283753|gb|AAH32...
1.0E-54 [23..405] [1..375]
gi|67901120, gi|... - gi|67901120|ref|XP_680816.1| hypothetical protein AN7547.2 [Aspergillus nidulans FGSC A4], ref|XP_41...
2.0E-50 [35..835] [7..822]
gi|4432902 - gi|4432902|dbj|BAA20996.1| kinesin-like protein [Caenorhabditis elegans]
6.0E-50 [46..397] [57..392]
gi|31193926, gi|... - gi|50920323|ref|XP_470522.1| putative kinesin heavy chain, 5'-partial [Oryza sativa (japonica cultiv...
4.0E-49 [2..376] [247..626]
gi|46097382, gi|... - gi|71006082|ref|XP_757707.1| hypothetical protein UM01560.1 [Ustilago maydis 521], ref|XP_399175.1| ...
4.0E-49 [34..519] [3..536]

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Predicted Domain #1
Region A:
Residues: [1-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAENQNTGQ DRSSNSISKN GNSQVGCHTV PNEELNITVA VRCRGRNERE ISMKSSVVVN  60
   61 VPDITGSKEI SINTTGDTGI TAQMNAKRYT VDKVFGPGAS QDLIFDEVAG PLFQDFIKGY 120
  121 NCTVLVYGMT STGKTYTMTG DEKLYNGELS DAAGIIPRVL LKLFDTLELQ QNDYVVKCSF 180
  181 IELYNEELKD LLDSNSNGSS NTGFDGQFMK KLRIFDSSTA NNTTSNSASS SRSNSRNSSP 240
  241 RSLNDLTPKA ALLRKRLRTK SLPNTI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.39794
Match: 1gojA_
Description: Kinesin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
microtubule motor activity 7.68336791348661 bayes_pls_golite062009
plus-end-directed microtubule motor activity 4.97507344344589 bayes_pls_golite062009
microfilament motor activity 4.176620576177 bayes_pls_golite062009
motor activity 4.04927796049806 bayes_pls_golite062009
nucleoside-triphosphatase activity 2.95079405147356 bayes_pls_golite062009
pyrophosphatase activity 2.87427509025394 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides 2.85499564954033 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 2.85178667290149 bayes_pls_golite062009
actin-dependent ATPase activity 2.77140616759165 bayes_pls_golite062009
microtubule plus-end binding 2.71138928021716 bayes_pls_golite062009
tubulin binding 2.67743463093593 bayes_pls_golite062009
microtubule binding 2.59155206524122 bayes_pls_golite062009
DNA-dependent ATPase activity 2.58390156971125 bayes_pls_golite062009
transporter activity 2.58140740499725 bayes_pls_golite062009
binding 2.44689197844883 bayes_pls_golite062009
cytoskeletal protein binding 2.4101693596493 bayes_pls_golite062009
transmembrane transporter activity 2.39695871109024 bayes_pls_golite062009
ATPase activity 2.39535714892224 bayes_pls_golite062009
ATPase activity, coupled 2.18396165590908 bayes_pls_golite062009
actin binding 1.75397031486306 bayes_pls_golite062009
DNA helicase activity 1.72320119360938 bayes_pls_golite062009
hydrolase activity 1.57549510726226 bayes_pls_golite062009
ATP-dependent DNA helicase activity 1.52935820732225 bayes_pls_golite062009
tubulin-dependent ATPase activity 1.43792266082071 bayes_pls_golite062009
helicase activity 1.33212695797068 bayes_pls_golite062009
substrate-specific transporter activity 1.29730375126024 bayes_pls_golite062009
purine nucleotide binding 0.929901285538132 bayes_pls_golite062009
nucleotide binding 0.922442819194247 bayes_pls_golite062009
purine ribonucleotide binding 0.920987930180051 bayes_pls_golite062009
ribonucleotide binding 0.920926158369519 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.906554174337376 bayes_pls_golite062009
recombinase activity 0.88721523495679 bayes_pls_golite062009
actin filament binding 0.728264616959762 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.724847255896311 bayes_pls_golite062009
translation regulator activity 0.68989258674288 bayes_pls_golite062009
protein-DNA loading ATPase activity 0.654899784430321 bayes_pls_golite062009
structure-specific DNA binding 0.579644950922817 bayes_pls_golite062009
nucleic acid binding 0.574285918029279 bayes_pls_golite062009
kinetochore binding 0.534490088080411 bayes_pls_golite062009
GTPase activity 0.437665353870877 bayes_pls_golite062009
active transmembrane transporter activity 0.434775387083003 bayes_pls_golite062009
ATP binding 0.41092997612902 bayes_pls_golite062009
guanyl nucleotide binding 0.399434758448606 bayes_pls_golite062009
GTP binding 0.398333597279278 bayes_pls_golite062009
guanyl ribonucleotide binding 0.39332178627529 bayes_pls_golite062009
adenyl ribonucleotide binding 0.385813421701492 bayes_pls_golite062009
adenyl nucleotide binding 0.377870145186619 bayes_pls_golite062009
ion transmembrane transporter activity 0.355466224802969 bayes_pls_golite062009
RNA helicase activity 0.34746349346164 bayes_pls_golite062009
centromeric DNA binding 0.322818640526369 bayes_pls_golite062009
general RNA polymerase II transcription factor activity 0.312659433116074 bayes_pls_golite062009
ATP-dependent RNA helicase activity 0.30832907234141 bayes_pls_golite062009
RNA-dependent ATPase activity 0.29532978396745 bayes_pls_golite062009
primary active transmembrane transporter activity 0.294474570607914 bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity 0.282352478532746 bayes_pls_golite062009
DNA binding 0.259361683038035 bayes_pls_golite062009
ATP-dependent helicase activity 0.25143870859482 bayes_pls_golite062009
purine NTP-dependent helicase activity 0.25143870859482 bayes_pls_golite062009
DNA clamp loader activity 0.234068677215771 bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances 0.220608508617331 bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances 0.219533217661421 bayes_pls_golite062009
double-stranded DNA binding 0.2192434828134 bayes_pls_golite062009
ATPase activity, coupled to movement of substances 0.219157471322311 bayes_pls_golite062009
protein transporter activity 0.178442534411253 bayes_pls_golite062009
mismatched DNA binding 0.13866566261611 bayes_pls_golite062009
protein binding 0.071010918255742 bayes_pls_golite062009
minus-end-directed microtubule motor activity 0.068779631341469 bayes_pls_golite062009
transcription regulator activity 0.050107780790998 bayes_pls_golite062009
cation transmembrane transporter activity 0.0254369227200564 bayes_pls_golite062009
structural constituent of cytoskeleton 0.0111338193708552 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [267-1000]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQQYQQQQAV NSRNNSSSNS GSTTNNASSN TNTNNGQRSS MAPNDQTNGI YIQNLQEFHI  60
   61 TNAMEGLNLL QKGLKHRQVA STKMNDFSSR SHTIFTITLY KKHQDELFRI SKMNLVDLAG 120
  121 SENINRSGAL NQRAKEAGSI NQSLLTLGRV INALVDKSGH IPFRESKLTR LLQDSLGGNT 180
  181 KTALIATISP AKVTSEETCS TLEYASKAKN IKNKPQLGSF IMKDILVKNI TMELAKIKSD 240
  241 LLSTKSKEGI YMSQDHYKNL NSDLESYKNE VQECKREIES LTSKNALLVK DKLKSKETIQ 300
  301 SQNCQIESLK TTIDHLRAQL DKQHKTEIEI SDFNNKLQKL TEVMQMALHD YKKRELDLNQ 360
  361 KFEMHITKEI KKLKSTLFLQ LNTMQQESIL QETNIQPNLD MIKNEVLTLM RTMQEKAELM 420
  421 YKDCVKKILN ESPKFFNVVI EKIDIIRVDF QKFYKNIAEN LSDISEENNN MKQYLKNHFF 480
  481 KNNHQELLNR HVDSTYENIE KRTNEFVENF KKVLNDHLDE NKKLIMQNLT TATSAVIDQE 540
  541 MDLFEPKRVK WENSFDLIND CDSMNNEFYN SMAATLSQIK STVDTSSNSM NESISVMKGQ 600
  601 VEESENAISL LKNNTKFNDQ FEQLINKHNM LKDNIKNSIT STHSHITNVD DIYNTIENIM 660
  661 KNYGNKENAT KDEMIENILK EIPNLSKKMP LRLSNINSNS VQSVISPKKH AIEDENKSSE 720
  721 NVDNEGSRKM LKIE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 1i84S_
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle