| Protein: | FRE5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 694 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FRE5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..694] | [1..694] |
|
|
0.0 | [72..692] | [167..867] |
|
|
0.0 | [72..692] | [222..921] |
|
|
0.0 | [72..692] | [215..939] |
|
|
0.0 | [72..692] | [222..921] |
|
|
0.0 | [72..692] | [214..938] |
|
Region A: Residues: [1-185] |
1 11 21 31 41 51
| | | | | |
1 MLFARLVLLL VYLAPGSLAK PASTKKRTQW DQIAIDACAK ELESHKFDTD VKGRHATLCT 60
61 YEPALGSWLH CAKDVLDSRK KSKKIFEKTF SKINQYCHDY HKDEVVSNEE YYRIFANASL 120
121 FIRPLDEVKE NIRYPVTPNK ASLDRWVWAY FGPLDNIDKG NVYGVTICLY WIGVLFIAAV 180
181 YHFLN
|
| Detection Method: |  |
| Confidence: | 5.045757 |
| Match: | 5tnc__ |
| Description: | Troponin C |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cation binding | 2.62077305565026 | bayes_pls_golite062009 |
| metal ion binding | 2.62077305565026 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 2.61874575467092 | bayes_pls_golite062009 |
| ion binding | 2.61312132078717 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 2.57032504567157 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 2.55650624542181 | bayes_pls_golite062009 |
| binding | 2.54774920478325 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 2.37465721152046 | bayes_pls_golite062009 |
| cation channel activity | 1.49312394054212 | bayes_pls_golite062009 |
| calcium ion binding | 1.40919295397643 | bayes_pls_golite062009 |
| transporter activity | 1.15928534291452 | bayes_pls_golite062009 |
| protein binding | 1.06263369232144 | bayes_pls_golite062009 |
| channel activity | 1.05847414989139 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 1.05847414989139 | bayes_pls_golite062009 |
| ion channel activity | 1.0369591011376 | bayes_pls_golite062009 |
| substrate-specific channel activity | 1.03529144716694 | bayes_pls_golite062009 |
| voltage-gated cation channel activity | 0.986621437232479 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.945691505472547 | bayes_pls_golite062009 |
| voltage-gated ion channel activity | 0.910148857310729 | bayes_pls_golite062009 |
| potassium channel activity | 0.906643355854798 | bayes_pls_golite062009 |
| voltage-gated channel activity | 0.896351900356978 | bayes_pls_golite062009 |
| gated channel activity | 0.855502499003241 | bayes_pls_golite062009 |
| voltage-gated potassium channel activity | 0.810245330492755 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.693724160233023 | bayes_pls_golite062009 |
| transcription regulator activity | 0.529057692398468 | bayes_pls_golite062009 |
| molecular transducer activity | 0.503769734882556 | bayes_pls_golite062009 |
| signal transducer activity | 0.503769734882556 | bayes_pls_golite062009 |
| hydrolase activity | 0.378268353045111 | bayes_pls_golite062009 |
| nucleic acid binding | 0.345084390599452 | bayes_pls_golite062009 |
| 0.34446792626966 | bayes_pls_golite062009 | |
| channel regulator activity | 0.32809521759917 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.246383459363256 | bayes_pls_golite062009 |
| DNA binding | 0.14285249145193 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0776924650284998 | bayes_pls_golite062009 |
|
Region A: Residues: [186-345] |
1 11 21 31 41 51
| | | | | |
1 FSRLKQTVFK NKVSAFLRGH YVLPALVHNH AMSVGRWFFI GLVPTRLETL VLFGYVLLHG 60
61 FLLSSYNFDH NELLSDRRSQ VLIFLSDRAG ILAFAHFPLI VLFGGKNSTM TWLTGIRYTA 120
121 FITYHKWLGR FMLVDCTIHA IGYTYHAYIE NYWKYVKYSD
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [346-524] |
1 11 21 31 41 51
| | | | | |
1 LWTSGRHAMI IVGILVFFSF FFFRRHYYEL FVITHIILAI GFFHACWKHC YKLGWGEWIM 60
61 ACALFWIADR ILRLIKIAIF GMPWAKLKLC GESMIEVRIS KSSKWWKAEP GQYIYLYFLR 120
121 PKIFWQSHPF TVMDSLVEDG ELVVVITVKN GLTKKLQEYL LESEGYTEMR VLAEGPYGQ
|
| Detection Method: | |
| Confidence: | 42.045757 |
| Match: | 1cqxA_ |
| Description: | Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [525-694] |
1 11 21 31 41 51
| | | | | |
1 STRTHLFESL LFIAGGAGVP GPLSMAIKAG RQVKSNDSHQ MIKFVWSVRN LDLLEVYRKE 60
61 IMVLKELNID TKIYFTGERK DESNTEEGAI ANMSTEGRLL TTSKSAEMIT DFGRPNIDEI 120
121 IEEAVSGAKS LLVTCCGSEG FVDKTRELTA KRVLEHGDKW IEYVEEFQNW
|
| Detection Method: | |
| Confidence: | 42.045757 |
| Match: | 1cqxA_ |
| Description: | Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 1.45374095556065 | bayes_pls_golite062009 |
| transferase activity | 1.15480450573972 | bayes_pls_golite062009 |
| binding | 1.13408475648113 | bayes_pls_golite062009 |
| oxidoreductase activity | 0.27336340260908 | bayes_pls_golite062009 |
| protein binding | 0.144900113694048 | bayes_pls_golite062009 |
| cofactor binding | 0.0731141170494622 | bayes_pls_golite062009 |
