| Protein: | PRP2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 876 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..876] | [1..876] |
|
|
0.0 | [5..876] | [380..1194] |
|
|
0.0 | [15..876] | [362..1169] |
|
|
0.0 | [6..875] | [28..882] |
|
|
0.0 | [6..875] | [176..1031] |
|
|
0.0 | [5..875] | [163..1034] |
|
|
0.0 | [15..876] | [331..1141] |
|
Region A: Residues: [1-165] |
1 11 21 31 41 51
| | | | | |
1 MSSITSETGK RRVKRTYEVT RQNDNAVRIE PSSLGEEEDK EAKDKNSALQ LKRSRYDPNK 60
61 VFSNTNQGPE KNNLKGEQLG SQKKSSKYDE KITSNNELTT KKGLLGDSEN ETKYASSNSK 120
121 FNVEVTHKIK NAKEIDKINR QRMWEEQQLR NAMAGQSDHP DDITL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [166-600] |
1 11 21 31 41 51
| | | | | |
1 EGSDKYDYVF DTDAMIDYTN EEDDLLPEEK LQYEARLAQA LETEEKRILT IQEARKLLPV 60
61 HQYKDELLQE IKKNQVLIIM GETGSGKTTQ LPQYLVEDGF TDQGKLQIAI TQPRRVAATS 120
121 VAARVADEMN VVLGKEVGYQ IRFEDKTTPN KTVLKYMTDG MLLREFLTDS KLSKYSCIMI 180
181 DEAHERTLAT DILIGLLKDI LPQRPTLKLL ISSATMNAKK FSEFFDNCPI FNVPGRRYPV 240
241 DIHYTLQPEA NYIHAAITTI FQIHTTQSLP GDILVFLTGQ EEIERTKTKL EEIMSKLGSR 300
301 TKQMIITPIY ANLPQEQQLK IFQPTPENCR KVVLATNIAE TSLTIDGIRY VIDPGFVKEN 360
361 SYVPSTGMTQ LLTVPCSRAS VDQRAGRAGR VGPGKCFRIF TKWSYLHELE LMPKPEITRT 420
421 NLSNTVLLLL SLGVT
|
| Detection Method: | |
| Confidence: | 68.09691 |
| Match: | 1fuuA_ |
| Description: | Initiation factor 4a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 4.704140727858 | bayes_pls_golite062009 | |
| binding | 2.44689197844883 | bayes_pls_golite062009 |
| RNA binding | 2.29590582680214 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.57653963868443 | bayes_pls_golite062009 |
| RNA helicase activity | 1.42791449104435 | bayes_pls_golite062009 |
| nucleic acid binding | 1.41477043612798 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.39335733374328 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.36724390116598 | bayes_pls_golite062009 |
| DNA binding | 1.11699929651302 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription regulator activity | 0.989226939888218 | bayes_pls_golite062009 |
| mRNA binding | 0.76699944561918 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.652333406433794 | bayes_pls_golite062009 |
| helicase activity | 0.6191010101321 | bayes_pls_golite062009 |
| motor activity | 0.61636596887462 | bayes_pls_golite062009 |
| structural molecule activity | 0.596382945962261 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.461763181659193 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.458831409927227 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.455976987338331 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.422944846459286 | bayes_pls_golite062009 |
| snRNA binding | 0.418985924846052 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 0.29664013896754 | bayes_pls_golite062009 |
| translation release factor activity | 0.178286731022211 | bayes_pls_golite062009 |
| translation termination factor activity | 0.151456842619444 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| protein binding | 0.071010918255742 | bayes_pls_golite062009 |
| transcription factor activity | 0.0434163635422169 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 0.0272673919333979 | bayes_pls_golite062009 |
|
Region A: Residues: [601-697] |
1 11 21 31 41 51
| | | | | |
1 DLIKFPLMDK PSIPTLRKSL ENLYILGALN SKGTITRLGK MMCEFPCEPE FAKVLYTAAT 60
61 HEQCQGVLEE CLTIVSMLHE TPSLFIGQKR DAAASVL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.762 | 0.239 | pre-mRNA splicing factor activity | a.39.1 | EF-hand |
| View | Download | 0.889 | 0.073 | pre-mRNA splicing factor activity | a.118.1 | ARM repeat |
| View | Download | 0.763 | 0.029 | nucleus | a.74.1 | Cyclin-like |
| View | Download | 0.703 | 0.003 | nucleus | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.842 | 0.003 | pre-mRNA splicing factor activity | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.612 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.497 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.485 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.465 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.459 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.446 | N/A | N/A | e.37.1 | Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains |
| View | Download | 0.433 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.432 | N/A | N/A | a.11.2 | Second domain of FERM |
| View | Download | 0.419 | N/A | N/A | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.406 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.378 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.377 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.372 | N/A | N/A | a.118.1 | ARM repeat |
| View | Download | 0.366 | N/A | N/A | d.87.2 | CO dehydrogenase flavoprotein C-terminal domain-like |
| View | Download | 0.362 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.353 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.348 | N/A | N/A | a.57.1 | Protein HNS-dependent expression A; HdeA |
| View | Download | 0.346 | N/A | N/A | a.76.1 | Iron-dependent represor protein, dimerization domain |
| View | Download | 0.335 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.330 | N/A | N/A | a.46.1 | Methionine synthase domain |
| View | Download | 0.329 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.324 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.324 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.319 | N/A | N/A | a.77.1 | DEATH domain |
| View | Download | 0.300 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.299 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.297 | N/A | N/A | a.60.6 | DNA polymerase beta, N-terminal domain-like |
| View | Download | 0.295 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.292 | N/A | N/A | c.13.2 | Anti-sigma factor antagonist SpoIIaa |
| View | Download | 0.289 | N/A | N/A | c.114.1 | YchN-like |
| View | Download | 0.284 | N/A | N/A | a.50.1 | Anaphylotoxins (complement system) |
| View | Download | 0.280 | N/A | N/A | d.58.17 | Metal-binding domain |
| View | Download | 0.275 | N/A | N/A | d.58.14 | Ribosomal protein S6 |
| View | Download | 0.275 | N/A | N/A | a.3.1 | Cytochrome c |
| View | Download | 0.274 | N/A | N/A | a.46.2 | Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain |
| View | Download | 0.274 | N/A | N/A | d.58.27 | Translational regulator protein regA |
| View | Download | 0.263 | N/A | N/A | a.165.1 | Myosin phosphatase inhibitor 17kDa protein, CPI-17 |
| View | Download | 0.262 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.261 | N/A | N/A | d.58.48 | MTH1187-like |
| View | Download | 0.260 | N/A | N/A | d.58.43 | Mechanosensitive channel protein MscS (YggB), C-terminal domain |
| View | Download | 0.259 | N/A | N/A | a.69.1 | C-terminal domain of alpha and beta subunits of F1 ATP synthase |
| View | Download | 0.259 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.242 | N/A | N/A | d.58.5 | GlnB-like |
| View | Download | 0.242 | N/A | N/A | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.240 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
| View | Download | 0.240 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.237 | N/A | N/A | a.97.1 | An anticodon-binding domain of class I aminoacyl-tRNA synthetases |
| View | Download | 0.236 | N/A | N/A | a.68.1 | Wiscott-Aldrich syndrome protein, WASP, C-terminal domain |
| View | Download | 0.235 | N/A | N/A | a.60.1 | SAM/Pointed domain |
| View | Download | 0.233 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.233 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.233 | N/A | N/A | a.43.1 | Met repressor-like |
| View | Download | 0.232 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.231 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.225 | N/A | N/A | c.98.2 | HPr kinase/phoshatase HprK N-terminal domain |
| View | Download | 0.222 | N/A | N/A | a.85.1 | Hemocyanin, N-terminal domain |
| View | Download | 0.220 | N/A | N/A | c.15.1 | BRCT domain |
| View | Download | 0.219 | N/A | N/A | d.15.2 | CAD & PB1 domains |
| View | Download | 0.218 | N/A | N/A | a.60.12 | DNA polymerase beta-like, second domain |
| View | Download | 0.218 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.218 | N/A | N/A | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.217 | N/A | N/A | a.11.2 | Second domain of FERM |
| View | Download | 0.216 | N/A | N/A | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.212 | N/A | N/A | d.58.49 | YajQ-like |
| View | Download | 0.210 | N/A | N/A | a.56.1 | CO dehydrogenase ISP C-domain like |
| View | Download | 0.209 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.206 | N/A | N/A | a.28.2 | Colicin E immunity proteins |
| View | Download | 0.204 | N/A | N/A | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.204 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.203 | N/A | N/A | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.201 | N/A | N/A | a.118.1 | ARM repeat |
|
Region A: Residues: [698-876] |
1 11 21 31 41 51
| | | | | |
1 SEVESDHILY LEIFNQWRNS KFSRSWCQDH KIQFKTMLRV RNIRNQLFRC SEKVGLVEKN 60
61 DQARMKIGNI AGYINARITR CFISGFPMNI VQLGPTGYQT MGRSSGGLNV SVHPTSILFV 120
121 NHKEKAQRPS KYVLYQQLML TSKEFIRDCL VIPKEEWLID MVPQIFKDLI DDKTNRGRR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
