| Protein: | NMD5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1048 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NMD5.
| Description | E-value | Query Range |
Subject Range |
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0.0 | [1..1048] | [1..1048] |
|
|
0.0 | [1..1046] | [1..997] |
|
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0.0 | [1..1046] | [1..996] |
|
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0.0 | [1..1046] | [1..996] |
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0.0 | [1..1045] | [1..1012] |
|
|
0.0 | [6..1043] | [3..1012] |
|
Region A: Residues: [1-726] |
1 11 21 31 41 51
| | | | | |
1 MDITELLQCF ACTLDHNAAV RTNAETHLKN ASKVPGFLGA CLDIIAADEV PENIKLSASL 60
61 YFKNKITYGW SAGARQGSNE LLDSHVDPDE KPVVKDMLIK TMVSVSKTSP RCIRVLKSAL 120
121 TVIISEDYPS KKWGNLLPNS LELLANEDIT VTYVGLLCLA EIFRTYRWKN NDERQDLEEL 180
181 ILNYFPALLN YGANVLFQDG KYMNNEQIGE LVKLIIKIYK FVSYHDLPFT LQRSESFTPW 240
241 ACFFVSIIQQ PLPQEVLSIS DIEVRSKNPW VKCKKWALAN LYRLFQRYAS TSLTRKFQYD 300
301 EFKQMYCEEF LTQFLQVVFD QIEKWGTGQL WLSDECLYYI LNFVEQCVVQ KTTWKLVGPH 360
361 YNVILQHVIF PLLKPTAETL EAFDNDPQEY INRNMDFWDV GYSPDLAALA LLTTCVTKRG 420
421 KTTLQPTLEF MVSTLQSAVG DYNNIMLDNA LQIESCLRIF SSIIDRLITK DSPFASEMEK 480
481 FILTYVLPFF KSQYGFLQSR VCDICSKLGS MDFKDPVITS TIYEGVMNCL NNSSNSLPVE 540
541 LTAALALQTF ISDDQFNMKL SEHVVPTMQK LLSLSNDFES DVISGVMQDF VEQFAEQLQP 600
601 FGVELMNTLV QQFLKLAIDL HETSNLDPDS FTNVDSIPDE SDKQMAALGI LSTTISILLS 660
661 FENSPEILKN LEQSFYPAAE FILKNDIEDF YRECCEFVEN STFLLRDITP ISWKILELIG 720
721 ECNRKP
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| protein transporter activity | 4.58709163830613 | bayes_pls_golite062009 |
| binding | 3.0667965351474 | bayes_pls_golite062009 |
| protein transmembrane transporter activity | 2.74547353635661 | bayes_pls_golite062009 |
| transporter activity | 2.48700774379895 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 2.26725422172281 | bayes_pls_golite062009 |
| nuclear export signal receptor activity | 2.13470398426489 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.97003189625955 | bayes_pls_golite062009 |
| nuclear localization sequence binding | 1.91487015967262 | bayes_pls_golite062009 |
| protein binding | 1.73688475473996 | bayes_pls_golite062009 |
| molecular transducer activity | 1.51103985174196 | bayes_pls_golite062009 |
| signal transducer activity | 1.51103985174196 | bayes_pls_golite062009 |
| actin binding | 1.4328432044371 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.28481004323799 | bayes_pls_golite062009 |
| RNA binding | 1.20550543134698 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 1.09652988954158 | bayes_pls_golite062009 |
| nucleic acid binding | 1.00841167631924 | bayes_pls_golite062009 |
| peptide binding | 0.61212282188613 | bayes_pls_golite062009 |
| signal sequence binding | 0.57106697498903 | bayes_pls_golite062009 |
| structural molecule activity | 0.449804281824548 | bayes_pls_golite062009 |
| transcription regulator activity | 0.385452858197632 | bayes_pls_golite062009 |
| mRNA binding | 0.37278269424461 | bayes_pls_golite062009 |
| DNA binding | 0.309260217284589 | bayes_pls_golite062009 |
| active transmembrane transporter activity | 0.252495966234234 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.248585912061178 | bayes_pls_golite062009 |
| primary active transmembrane transporter activity | 0.226380819487924 | bayes_pls_golite062009 |
| P-P-bond-hydrolysis-driven transmembrane transporter activity | 0.217517113570989 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 0.178770060806735 | bayes_pls_golite062009 |
| ATPase activity, coupled to movement of substances | 0.175241020572885 | bayes_pls_golite062009 |
| ATPase activity, coupled to transmembrane movement of substances | 0.174922130116569 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.100181463251306 | bayes_pls_golite062009 |
| pyrophosphatase activity | 0.0635404099346928 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 0.0548082069333885 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 0.052195223119721 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.0405268469927988 | bayes_pls_golite062009 |
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Region A: Residues: [727-866] |
1 11 21 31 41 51
| | | | | |
1 DSMVSYYLSD FMLALNNILI YGRNELKKNE FYTKIIFEIY QKAVTAEDNS LDDLRVVFDL 60
61 SQELVLALDD SLPQQYRERL LADVVGSILT QKNELKTNVV FSVTAFNVVI SNMITEPLIT 120
121 LQYLKQQGCL EIFFQTWITD
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.576 | 0.159 | protein transmembrane transporter activity | a.1.1 | Globin-like |
| View | Download | 0.568 | 0.031 | protein transmembrane transporter activity | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.796 | 0.031 | protein transmembrane transporter activity | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.573 | 0.027 | protein transmembrane transporter activity | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.617 | N/A | N/A | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.499 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.428 | N/A | N/A | e.37.1 | Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains |
| View | Download | 0.416 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.411 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.406 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.362 | N/A | N/A | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.351 | N/A | N/A | a.29.2 | Bromodomain |
| View | Download | 0.332 | N/A | N/A | a.24.11 | Bacterial GAP domain |
| View | Download | 0.329 | N/A | N/A | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.322 | N/A | N/A | d.122.1 | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase |
| View | Download | 0.317 | N/A | N/A | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.314 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.313 | N/A | N/A | a.29.4 | RecG, N-terminal domain |
| View | Download | 0.312 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.311 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.303 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.303 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.298 | N/A | N/A | d.108.1 | Acyl-CoA N-acyltransferases (Nat) |
| View | Download | 0.282 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.274 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.266 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.264 | N/A | N/A | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.263 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.261 | N/A | N/A | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.260 | N/A | N/A | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.260 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.253 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.248 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.248 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.245 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.244 | N/A | N/A | a.83.1 | Guanido kinase N-terminal domain |
| View | Download | 0.236 | N/A | N/A | c.23.14 | Nucleoside 2-deoxyribosyltransferase |
| View | Download | 0.232 | N/A | N/A | a.24.10 | Histidine-containing phosphotransfer domain, HPT domain |
| View | Download | 0.230 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.229 | N/A | N/A | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.227 | N/A | N/A | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.225 | N/A | N/A | a.74.1 | Cyclin-like |
| View | Download | 0.224 | N/A | N/A | d.92.1 | Metalloproteases ("zincins"), catalytic domain |
| View | Download | 0.220 | N/A | N/A | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.220 | N/A | N/A | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.218 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.215 | N/A | N/A | d.81.1 | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain |
| View | Download | 0.215 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.214 | N/A | N/A | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.211 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.208 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.206 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.204 | N/A | N/A | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.200 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
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Region A: Residues: [867-1048] |
1 11 21 31 41 51
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1 YIPNYKRCYD IKLSVLALLK IILKLESNDY SVLNLENLVP QLGSIVTQLA SRLPTALRQL 60
61 ANQRKEFSSS GFEEDTKWDE NFLDVGDDDE NDDEGDLTEK YLELIKNRAD SLDFVDGYDA 120
121 KETFDDLEED PLTGSILDTV DVYKVFKESI ANLQHVDSNR YQGILRHLTP ADQELFMGIM 180
181 NA
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.733 | 0.031 | protein transmembrane transporter activity | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.413 | 0.021 | protein transmembrane transporter activity | a.47.2 | t-snare proteins |
| View | Download | 0.271 | 0.016 | protein transmembrane transporter activity | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.362 | 0.006 | protein transmembrane transporter activity | f.15.1 | Small-conductance potassium channel |
| View | Download | 0.339 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.226 | N/A | N/A | a.24.1 | Apolipoprotein |
| View | Download | 0.221 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.221 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.213 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.203 | N/A | N/A | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.203 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.203 | N/A | N/A | d.92.1 | Metalloproteases ("zincins"), catalytic domain |
