| Protein: | MDV1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 714 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDV1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [16..714] | [849..1481] |
|
|
0.0 | [13..685] | [1029..1668] |
|
|
0.0 | [65..625] | [823..1314] |
|
Region A: Residues: [1-516] |
1 11 21 31 41 51
| | | | | |
1 MSVNDQITHI GKTLSTTASA FLNYQKSNSN TQDVLTNNGP YKNLLSNTVN NASSTSYFYK 60
61 RTEHGRFVKN ASNTFEDIYS KTRRGDVFRN KFTDNKTCFR MLTYISDDLL NEIPTKEGLK 120
121 SDADGKLLTE GGENENLRKN ASKKETSLFQ GFKSYLPIAE LAIENTERLN YDTNGTSGTV 180
181 GAKDVMSKTN ERDEIHTELP NFQDSFLIPP GVETKKISSS YSPSALKSFS QTLVNSLEFL 240
241 NIQKNSTLSE IRDIEVEVEN LRQKKEKLLG KIANIEQNQL LLEDNLKQID DRLDFLEEYG 300
301 LEVIEANSDE NAEDDGMSER KALKNDAIRN EGVTTESISS EASNLPPRRR QQLRDDNSLN 360
361 RLGAFYSKSK KRHRKSFPTF QQLYEPGTKI GSIMSTHDDF LTCLDFDAPF GTLCTAGYLD 420
421 HTVKIWDLSK QNKIGELAGH LATINCMQIN RDYGTLVTGG RDAALKLWNL NLAQQLYQET 480
481 QNLTSPTNHI DSPCVHTFEA HTDEVTALSL DPSFLV
|
| Detection Method: |  |
| Confidence: | 4.522879 |
| Match: | 1k32A_ |
| Description: | Tricorn protease; Tricorn protease N-terminal domain; Tricorn protease domain 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| actin binding | 3.31804728298431 | bayes_pls_golite062009 |
| GTPase activity | 3.23750443966606 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 3.1056443224755 | bayes_pls_golite062009 |
| tubulin binding | 2.76945430061825 | bayes_pls_golite062009 |
| microtubule binding | 2.72684103222924 | bayes_pls_golite062009 |
| dynein binding | 2.54821997913979 | bayes_pls_golite062009 |
| binding | 2.42570478946173 | bayes_pls_golite062009 |
| transcription regulator activity | 2.3610959773142 | bayes_pls_golite062009 |
| nucleic acid binding | 2.30918780727915 | bayes_pls_golite062009 |
| histone methyltransferase activity (H3-K4 specific) | 2.299832037975 | bayes_pls_golite062009 |
| snoRNA binding | 2.20077763915561 | bayes_pls_golite062009 |
| dynactin binding | 1.92897254169098 | bayes_pls_golite062009 |
| DNA binding | 1.71685536470455 | bayes_pls_golite062009 |
| actin filament binding | 1.5197243426595 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.22384651674093 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| receptor activity | 1.12819778129653 | bayes_pls_golite062009 |
| transcription factor activity | 1.08768505897883 | bayes_pls_golite062009 |
| S-adenosylmethionine-dependent methyltransferase activity | 1.06323957405727 | bayes_pls_golite062009 |
| microtubule plus-end binding | 1.01166033978052 | bayes_pls_golite062009 |
| molecular transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| signal transducer activity | 0.974380908248463 | bayes_pls_golite062009 |
| angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| type 1 angiotensin receptor binding | 0.920323565472959 | bayes_pls_golite062009 |
| 0.88172763425403 | bayes_pls_golite062009 | |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| transcription repressor activity | 0.658573452658359 | bayes_pls_golite062009 |
| transcription factor binding | 0.489473003915035 | bayes_pls_golite062009 |
| dynein intermediate chain binding | 0.443846546939402 | bayes_pls_golite062009 |
| receptor binding | 0.316169754698691 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.30761651528651 | bayes_pls_golite062009 |
| G-protein-coupled receptor binding | 0.251120087240234 | bayes_pls_golite062009 |
| ligase activity | 0.20682813699621 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.182612389752591 | bayes_pls_golite062009 |
| histone binding | 0.166694897714113 | bayes_pls_golite062009 |
| structural constituent of cytoskeleton | 0.118975415284669 | bayes_pls_golite062009 |
| structural molecule activity | 0.0588151480189092 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [517-714] |
1 11 21 31 41 51
| | | | | |
1 SGSQDRTIRQ WDLRSGKCLQ TIDLSFANVL TTSTNVDLSK STLLTQRNER PSIGALQSFD 60
61 AALATGTKDG VVRLWDLRSG KVIRTLKGHT DAITSLKFDS ACLVTGSYDR TVRIWDLRTG 120
121 LLNKFHAYSA PVLSLDLFQE NAAVVVADEP SVQIYDSEKD ESWSCVEQGN ETSVSTVKYK 180
181 ENYMVEGREN GDVNIWAV
|
| Detection Method: | |
| Confidence: | 185.751666 |
| Match: | 1gg2B_ |
| Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [633-714] |
1 11 21 31 41 51
| | | | | |
1 LRTGLLNKFH AYSAPVLSLD LFQENAAVVV ADEPSVQIYD SEKDESWSCV EQGNETSVST 60
61 VKYKENYMVE GRENGDVNIW AV
|
| Detection Method: | |
| Confidence: | 77.522879 |
| Match: | 2ovpB |
| Description: | No description for 2ovpB was found. |
