| Protein: | RTT107 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1070 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTT107.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1070] | [1..1070] |
|
|
0.0 | [69..1060] | [59..869] |
|
|
0.0 | [69..634] | [51..579] |
|
|
0.0 | [69..634] | [58..586] |
|
|
2.0E-85 | [69..494] | [137..583] |
|
|
5.0E-67 | [488..926] | [921..1337] |
|
|
2.0E-66 | [266..928] | [611..1298] |
|
Region A: Residues: [1-119] |
1 11 21 31 41 51
| | | | | |
1 MSTSLLFEQL NFLILVAAEA ELPIAHSTRK LLMDNSCNNC QIYELYNENL KDVKTDKDWF 60
61 MNKFGPQTVH FVISNTINFP FYKIVYFDLL IPVVSHTWVQ DSVKTKRHLR TNMYSPNPF
|
| Detection Method: |  |
| Confidence: | 8.32 |
| Match: | 1l0bA |
| Description: | Breast cancer associated protein, BRCA1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [120-260] |
1 11 21 31 41 51
| | | | | |
1 HLLRDCQVYI SKSSFNKCEY ILYSDLLHLL GGTLVNYISN RTTHVIVQSP QDPIIATVSK 60
61 LTFGSFSSSS TNKHTEKPLR EWKFVYPIWI LYHFKMAKPL KGELATLCEL DMQDTSEEQL 120
121 FAKWEEVIGD KQTSSSQLTL H
|
| Detection Method: | |
| Confidence: | 8.32 |
| Match: | 1l0bA |
| Description: | Breast cancer associated protein, BRCA1 |
| Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| damaged DNA binding | 2.78264840479873 | bayes_pls_golite062009 |
| binding | 2.39904249850929 | bayes_pls_golite062009 |
| nucleic acid binding | 2.01217461524277 | bayes_pls_golite062009 |
| DNA binding | 1.94626538619156 | bayes_pls_golite062009 |
| transcription regulator activity | 1.6615655042871 | bayes_pls_golite062009 |
| protein binding | 1.25126059595954 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.87932139868144 | bayes_pls_golite062009 |
| telomeric DNA binding | 0.53051501110858 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.436014478237905 | bayes_pls_golite062009 |
| transcription activator activity | 0.355931500039388 | bayes_pls_golite062009 |
| ligase activity | 0.334005199756535 | bayes_pls_golite062009 |
| transcription factor binding | 0.27424353108553 | bayes_pls_golite062009 |
| transcription repressor activity | 0.210876161781476 | bayes_pls_golite062009 |
| catalytic activity | 0.17721113579921 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.163902958036495 | bayes_pls_golite062009 |
|
Region A: Residues: [261-359] |
1 11 21 31 41 51
| | | | | |
1 PNKTLFKNHH FAISPDLNFF TPLYWFLKGF IEDLDGKVTP LSFSDDLKSV YQAFPDIDCY 60
61 IGHSANSPIL EKTKSIKPEI HVGNVSWLFY MFALQKFTP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [360-452] |
1 11 21 31 41 51
| | | | | |
1 VSQCKLIHQP FHAKLFTSKE LTVAYTNYFG SQRFYIQRLV EILGGLSTPE LTRKNTHLIT 60
61 KSTIGKKFKV AKKWSLDPQN AIIVTNHMWL EQC
|
| Detection Method: | |
| Confidence: | 7.91 |
| Match: | 1dgsA |
| Description: | NAD+-dependent DNA ligase, domain 3; NAD+-dependent DNA ligase; Adenylation domain of NAD+-dependent DNA ligase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [453-747] |
1 11 21 31 41 51
| | | | | |
1 YMNNSKLNPK DSRFQNFKLD DNMGWNIGQI GMDHSSLPTP KNLSMVTYDT QSISEKPPPT 60
61 NDQMDQINDN TNVLSKKDGT PISSFENSID EKIDKLQKIS GEVAVTHSGD LERSFVSRPS 120
121 RASFPVVDSK KSNLQKKDSN SDISMETEVF CEGHEKREEK EFTKPITEYD APKKQEIREQ 180
181 SRKKNDIDYK KEEEETELQV QLGQRTKREI KTSKKNEKEK ETNECHIEVD QMTNEKQGEE 240
241 STGKLISTED VTSKKDTDKF SHLFEGLSDN DDHINDEKPA VNSKYTTPKT SQNIT
|
| Detection Method: | |
| Confidence: | 32.39794 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [748-834] |
1 11 21 31 41 51
| | | | | |
1 SGVDTPTTAQ TQVFMPSSGN SRLAKTQAAK RLHTDIESLN EFQKNFKRKR IDSEEISLSQ 60
61 DVERSNNNKE LATKAEKILA RFNELPN
|
| Detection Method: | |
| Confidence: | 4.30103 |
| Match: | 2tmaA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [835-1070] |
1 11 21 31 41 51
| | | | | |
1 YDLKAVCTGC FHDGFNEVDI EILNQLGIKI FDNIKETDKL NCIFAPKILR TEKFLKSLSF 60
61 EPLKFALKPE FIIDLLKQIH SKKDKLSQIN INLFDYEING INESIISKTK LPTKVFERAN 120
121 IRCINLVNDI PGGVDTIGSV LKAHGIEKIN VLRSKKCTFE DIIPNDVSKQ ENGGIFKYVL 180
181 IVTKASQVKK FTKLINDRDK NETILIVEWN WCVESIFHLN VDFTSKKNVL YQKKNN
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
