| Protein: | UBP6 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 499 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP6.
| Description | E-value | Query Range |
Subject Range |
|
|
4.0E-90 | [1..495] | [1..495] |
|
|
4.0E-87 | [6..499] | [2..466] |
|
|
5.0E-79 | [7..497] | [3..478] |
|
|
3.0E-78 | [5..499] | [3..486] |
|
|
6.0E-78 | [5..499] | [3..486] |
|
|
2.0E-77 | [5..499] | [3..487] |
|
|
1.0E-73 | [5..494] | [3..467] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MSGETFEFNI RHSGKVYPIT LSTDATSADL KSKAEELTQV PSARQKYMVK GGLSGEESIK 60
61 IYPLIKPGST VMLLGTPDAN
|
| Detection Method: |  |
| Confidence: | 8.39794 |
| Match: | 1ud7A_ |
| Description: | Ubiquitin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| small conjugating protein ligase activity | 3.22676362920771 | bayes_pls_golite062009 |
| hydrolase activity | 2.77871378503369 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 2.46621820231139 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 2.24025972049145 | bayes_pls_golite062009 |
| binding | 2.19381585790185 | bayes_pls_golite062009 |
| protein tag | 1.93603588492737 | bayes_pls_golite062009 |
| protein binding | 1.84908810286528 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 1.54640383227873 | bayes_pls_golite062009 |
| SUMO ligase activity | 0.58905960362002 | bayes_pls_golite062009 |
| phosphotransferase activity, alcohol group as acceptor | 0.536856055841234 | bayes_pls_golite062009 |
| kinase activity | 0.506057697290914 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.410719674374641 | bayes_pls_golite062009 |
| nucleic acid binding | 0.383121378043805 | bayes_pls_golite062009 |
| protein kinase activity | 0.325253662829604 | bayes_pls_golite062009 |
| transferase activity | 0.236208643697075 | bayes_pls_golite062009 |
| DNA binding | 0.0840213088061073 | bayes_pls_golite062009 |
| transcription regulator activity | 0.0485636215870291 | bayes_pls_golite062009 |
|
Region A: Residues: [81-155] |
1 11 21 31 41 51
| | | | | |
1 LISKPAKKNN FIEDLAPEQQ VQQFAQLPVG FKNMGNTCYL NATLQALYRV NDLRDMILNY 60
61 NPSQGVSNSG AQDEE
|
| Detection Method: | |
| Confidence: | 14.031517 |
| Match: | PF00442 |
| Description: | No description for PF00442 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
| Term | Confidence | Notes |
| peptidase activity | 7.38847948226412 | bayes_pls_golite062009 |
| peptidase activity, acting on L-amino acid peptides | 7.21002260103248 | bayes_pls_golite062009 |
| endopeptidase activity | 6.57191549077589 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 6.54685807643041 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 6.39247995905454 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 5.91394445088241 | bayes_pls_golite062009 |
| hydrolase activity | 4.82615927403291 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 4.1832081096766 | bayes_pls_golite062009 |
| thiolester hydrolase activity | 2.96735553959103 | bayes_pls_golite062009 |
| SUMO-specific protease activity | 2.65263825059319 | bayes_pls_golite062009 |
| cysteine-type endopeptidase activity | 1.95802900199539 | bayes_pls_golite062009 |
| binding | 1.3276268995308 | bayes_pls_golite062009 |
| catalytic activity | 1.05972260874031 | bayes_pls_golite062009 |
| protein binding | 0.854677025220204 | bayes_pls_golite062009 |
| NEDD8-specific protease activity | 0.687958315289315 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 0.495951820083869 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.467924587720185 | bayes_pls_golite062009 |
| nucleic acid binding | 0.439226369799415 | bayes_pls_golite062009 |
| calcium-dependent cysteine-type endopeptidase activity | 0.196538841514154 | bayes_pls_golite062009 |
| DNA binding | 0.168761518285256 | bayes_pls_golite062009 |
| transferase activity | 0.0852393573521809 | bayes_pls_golite062009 |
|
Region A: Residues: [156-425] |
1 11 21 31 41 51
| | | | | |
1 IHKQIVIEMK RCFENLQNKS FKSVLPIVLL NTLRKCYPQF AERDSQGGFY KQQDAEELFT 60
61 QLFHSMSIVF GDKFSEDFRI QFKTTIKDTA NDNDITVKEN ESDSKLQCHI SGTTNFMRNG 120
121 LLEGLNEKIE KRSDLTGANS IYSVEKKISR LPKFLTVQYV RFFWKRSTNK KSKILRKVVF 180
181 PFQLDVADML TPEYAAEKVK VRDELRKVEK EKNEKEREIK RRKFDPSSSE NVMTPREQYE 240
241 TQVALNESEK DQWLEEYKKH FPPNLEKGEN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [426-499] |
1 11 21 31 41 51
| | | | | |
1 PSCVYNLIGV ITHQGANSES GHYQAFIRDE LDENKWYKFN DDKVSVVEKE KIESLAGGGE 60
61 SDSALILMYK GFGL
|
| Detection Method: | |
| Confidence: | 29.619789 |
| Match: | PF00443 |
| Description: | Ubiquitin carboxyl-terminal hydrolase |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
