| Protein: | TFB3 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 321 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TFB3.
| Description | E-value | Query Range |
Subject Range |
|
|
2.0E-83 | [1..321] | [1..321] |
|
|
7.0E-65 | [9..313] | [2..304] |
|
|
2.0E-61 | [9..313] | [2..304] |
|
|
1.0E-60 | [9..313] | [2..304] |
|
|
4.0E-57 | [9..313] | [3..305] |
|
|
1.0E-56 | [9..313] | [2..262] |
|
|
2.0E-51 | [10..313] | [10..304] |
|
Region A: Residues: [1-67] |
1 11 21 31 41 51
| | | | | |
1 MLMDEYEENK DMCPICKTDR YLSPDVKFLV NPECYHRICE SCVDRIFSLG PAQCPYKGCD 60
61 KILRKNK
|
| Detection Method: |  |
| Confidence: | 127.035458 |
| Match: | 1g25A_ |
| Description: | TFIIH Mat1 subunit |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 6.51043144330453 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 5.97121728620188 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 5.78935175140238 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 4.75377804653841 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 3.82459130917693 | bayes_pls_golite062009 |
| binding | 2.78710909602478 | bayes_pls_golite062009 |
| transcription regulator activity | 2.72498741013971 | bayes_pls_golite062009 |
| nucleic acid binding | 2.32387297115017 | bayes_pls_golite062009 |
| DNA binding | 2.00904221080834 | bayes_pls_golite062009 |
| transcription repressor activity | 1.98209395225978 | bayes_pls_golite062009 |
| protein binding | 1.5975811408548 | bayes_pls_golite062009 |
| transcription factor activity | 1.22579085356684 | bayes_pls_golite062009 |
| small conjugating protein-specific protease activity | 1.2126425713931 | bayes_pls_golite062009 |
| transcription factor binding | 1.11842175076436 | bayes_pls_golite062009 |
| ubiquitin-specific protease activity | 1.03469202541773 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.90321253993065 | bayes_pls_golite062009 |
| ligase activity | 0.63517530468004 | bayes_pls_golite062009 |
| cysteine-type peptidase activity | 0.50197530717959 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.384990496120483 | bayes_pls_golite062009 |
| ubiquitin thiolesterase activity | 0.265769062717221 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.255669498391574 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.233838999434784 | bayes_pls_golite062009 |
| catalytic activity | 0.14112008370434 | bayes_pls_golite062009 |
| transcription activator activity | 0.126093965701234 | bayes_pls_golite062009 |
| enzyme binding | 0.104373352314595 | bayes_pls_golite062009 |
|
Region A: Residues: [68-264] |
1 11 21 31 41 51
| | | | | |
1 FKTQIFDDVE VEKEVDIRKR VFNVFNKTID DFNGDLVEYN KYLEEVEDII YKLDHGIDVA 60
61 KTEEKLRTYE ELNKQLIMNN LERSRTEIES FEQRQKFEKE MKLKKRLLER QIEEEERMNK 120
121 EWTKKEIVNR LSTTTQDINE TIEGVKNTVK LKKSSARRKL EELNRVLKNN PYFNSNVNVQ 180
181 NSRLKDAVPF TPFNGDR
|
| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [265-321] |
1 11 21 31 41 51
| | | | | |
1 EAHPRFTLKG SVYNDPFIKD LEHRKEFIAS GFNTNYAYER VLTEAFMGLG CVISEEL
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.546 | 0.821 | nucleotide-excision repair | a.2.9 | C-terminal UvrC-binding domain of UvrB |
