| Protein: | SLX1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 304 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLX1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..304] | [1..304] |
|
|
1.0E-88 | [4..296] | [7..328] |
|
|
9.0E-75 | [12..288] | [5..237] |
|
|
9.0E-68 | [13..292] | [13..248] |
|
|
1.0E-40 | [13..242] | [10..203] |
|
|
1.0E-20 | [14..86] | [54..123] |
|
Region A: Residues: [1-167] |
1 11 21 31 41 51
| | | | | |
1 MSQKIQQHQF PDFYCCYLLQ SINKRQSFYV GSTPNPVRRL RQHNGKLAVG GAYRTKRDGS 60
61 RPWEMIMIVR GFPSKIAALQ FEHAWQHGYQ THYIAEKDRV VKHKAGGRTL HHKVALMKLL 120
121 LKHEFFQRMN LIVEVFNIKA WEVWKQDKFF IERDRFPINI QINENAL
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [168-304] |
1 11 21 31 41 51
| | | | | |
1 EEPKEKTVDV LMDHSDENLK VVEAVYTKVI ENERNIFETF EKKLTTGVVR CEICEKEIDY 60
61 TSEEQNLKPF VALCNNKDCG CVNHLKCLHR YFLDDEQLMV GRRNLIPRGG KCPKCDMFCD 120
121 WTTLVKFSTR MKLAHGK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [180-304] |
1 11 21 31 41 51
| | | | | |
1 DHSDENLKVV EAVYTKVIEN ERNIFETFEK KLTTGVVRCE ICEKEIDYTS EEQNLKPFVA 60
61 LCNNKDCGCV NHLKCLHRYF LDDEQLMVGR RNLIPRGGKC PKCDMFCDWT TLVKFSTRMK 120
121 LAHGK
|
| Detection Method: | |
| Confidence: | 2.29 |
| Match: | 1v87A |
| Description: | Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.56124977034668 | bayes_pls_golite062009 |
| protein binding | 1.69332800381364 | bayes_pls_golite062009 |
| transcription regulator activity | 1.34809367817517 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29443396975472 | bayes_pls_golite062009 |
| DNA binding | 0.857401028646596 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.842690858803658 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.740437317894105 | bayes_pls_golite062009 |
| transcription factor binding | 0.315997284960041 | bayes_pls_golite062009 |
| ligase activity | 0.204285145398262 | bayes_pls_golite062009 |
| catalytic activity | 0.168711389690753 | bayes_pls_golite062009 |
| transcription factor activity | 0.14897188736485 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.121420290407334 | bayes_pls_golite062009 |
