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Protein Overview: slx1

General Information:
Name(s) found: slx1 / SPAP27G11.15 [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • structure-specific endonuclease catalytic subunit [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 271 amino acids

    Gene Ontology:
    Cellular Component: Slx1-Slx4 complex [IDALink to PubMed article]
    nucleolar chromatin [IDALink to PubMed article]
    Biological Process: replication fork processing at rDNA locus [TASLink to PubMed article]
    double-strand break repair via homologous recombination [IGILink to PubMed article]
    replication fork processing [NASLink to PubMed article]
    recombination within rDNA repeats [IDALink to PubMed article]
    maintenance of rDNA [IMPLink to PubMed article]
    Molecular Function: zinc ion binding [IEA]
    protein binding [IPILink to PubMed article]
    endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLCNFYCCY LLKSNRTQSS GAVYIGSTPD PPRRLRQHNG EIVGGASKTK HGRPWSISCL  60
   61 VYGFPNKVSA LKFEWNWQNL GISRYTKDCD FRSKKQKTIM YCLKGLKHLV DSDTWRRWPL 120
  121 NITFLNKTAF SKWNQLGKTY GNINVYFDEE WLNGFHEKVI QKTYDHKLCL RKTISEPVKC 180
  181 NLCYECIESD ELRANCPFTD CNSINHLTCL ASSFLTEECQ VLPIEGMCTK CKRVLRWREF 240
  241 LSTVFTTSLE TDERDFESEN RIEIIDLELE K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..96] PSI-BLAST 22.39794 Solution NMR structure of the UPF0213 protein BH0048 from Bacillus halodurans. Northeast Structural Genomics target BhR2.
    2 View Details [97..271] FFAS03 2.71 brca1 RING domain


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle