| Protein: | SLX1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 304 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLX1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..304] | [1..304] |
|
|
1.0E-88 | [4..296] | [7..328] |
|
|
9.0E-75 | [12..288] | [5..237] |
|
|
9.0E-68 | [13..292] | [13..248] |
|
|
1.0E-40 | [13..242] | [10..203] |
|
|
1.0E-20 | [14..86] | [54..123] |
|
Region A: Residues: [1-167] |
1 11 21 31 41 51
| | | | | |
1 MSQKIQQHQF PDFYCCYLLQ SINKRQSFYV GSTPNPVRRL RQHNGKLAVG GAYRTKRDGS 60
61 RPWEMIMIVR GFPSKIAALQ FEHAWQHGYQ THYIAEKDRV VKHKAGGRTL HHKVALMKLL 120
121 LKHEFFQRMN LIVEVFNIKA WEVWKQDKFF IERDRFPINI QINENAL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.432 | 0.721 | DNA repair | a.96.1 | DNA-glycosylase |
| View | Download | 0.307 | 0.011 | DNA-dependent DNA replication | a.1.1 | Globin-like |
| View | Download | 0.314 | 0.003 | DNA-dependent DNA replication | c.26.2 | Adenine nucleotide alpha hydrolases-like |
| View | Download | 0.337 | 0.001 | DNA-dependent DNA replication | d.96.1 | Tetrahydrobiopterin biosynthesis enzymes-like |
| View | Download | 0.467 | N/A | N/A | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.262 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.256 | N/A | N/A | a.87.1 | DBL homology domain (DH-domain) |
| View | Download | 0.255 | N/A | N/A | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.227 | N/A | N/A | a.7.3 | Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain |
| View | Download | 0.227 | N/A | N/A | a.62.1 | Hepatitis B viral capsid (hbcag) |
| View | Download | 0.215 | N/A | N/A | f.1.1 | Colicin |
| View | Download | 0.210 | N/A | N/A | a.23.2 | Diol dehydratase, gamma subunit |
| View | Download | 0.200 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
|
Region A: Residues: [168-304] |
1 11 21 31 41 51
| | | | | |
1 EEPKEKTVDV LMDHSDENLK VVEAVYTKVI ENERNIFETF EKKLTTGVVR CEICEKEIDY 60
61 TSEEQNLKPF VALCNNKDCG CVNHLKCLHR YFLDDEQLMV GRRNLIPRGG KCPKCDMFCD 120
121 WTTLVKFSTR MKLAHGK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.347 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.551 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.563 | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.343 | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.334 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.306 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.250 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.241 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.220 | d.16.1 | FAD-linked reductases, C-terminal domain |
| View | Download | 0.218 | a.4.1 | Homeodomain-like |
| View | Download | 0.217 | d.2.1 | Lysozyme-like |
| View | Download | 0.216 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.212 | a.25.1 | Ferritin-like |
| View | Download | 0.203 | a.60.9 | lambda integrase-like, N-terminal domain |
|
Region A: Residues: [180-304] |
1 11 21 31 41 51
| | | | | |
1 DHSDENLKVV EAVYTKVIEN ERNIFETFEK KLTTGVVRCE ICEKEIDYTS EEQNLKPFVA 60
61 LCNNKDCGCV NHLKCLHRYF LDDEQLMVGR RNLIPRGGKC PKCDMFCDWT TLVKFSTRMK 120
121 LAHGK
|
| Detection Method: | |
| Confidence: | 2.29 |
| Match: | 1v87A |
| Description: | Solution Structure of the Ring-H2 Finger Domain of Mouse Deltex Protein 2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.56124977034668 | bayes_pls_golite062009 |
| protein binding | 1.69332800381364 | bayes_pls_golite062009 |
| transcription regulator activity | 1.34809367817517 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29443396975472 | bayes_pls_golite062009 |
| DNA binding | 0.857401028646596 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 0.842690858803658 | bayes_pls_golite062009 |
| ubiquitin-protein ligase activity | 0.740437317894105 | bayes_pls_golite062009 |
| transcription factor binding | 0.315997284960041 | bayes_pls_golite062009 |
| ligase activity | 0.204285145398262 | bayes_pls_golite062009 |
| catalytic activity | 0.168711389690753 | bayes_pls_golite062009 |
| transcription factor activity | 0.14897188736485 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 0.121420290407334 | bayes_pls_golite062009 |
