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View Structure Prediction Details

Protein: CDPK2_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 533 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDPK2_ORYSJ.

Description E-value Query
Range
Subject
Range
CDP2_ORYSA - (P53683) Calcium-dependent protein kinase, isoform 2 (EC 2.7.1.-) (CDPK 2)
gi|125558516 - gi|125558516|gb|EAZ04052.1| hypothetical protein OsI_26188 [Oryza sativa Indica Group]
gi|587498 - gi|587498|emb|CAA57157.1| calcium-dependent protein kinase [Oryza sativa (japonica cultivar-group)]
455.0 [0..1] [533..1]

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Predicted Domain #1
Region A:
Residues: [1-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSCCSRATS PDSGRGGANG YGYSHQTKPA QTTPSYNHPQ PPPPAEVRYT PSAMNPPVVP  60
   61 PVVAPPKPTP DTILGKPYDD VRSVYSLGKE LGRGQFGVTY LCTEIASGKQ YACKSISKRK 120
  121 LVSKADKEDI RREIQIMQHL SGQQNIVEFR GAYEDKSNVH VVMELCAGGE LFDRIIAKGH 180
  181 YSERAAATIC RAVVNVVNIC HFMGVMHRDL KPENFLLATK EENAMLKATD FGLSVFIEEG 240
  241 KMYRDIVGSA YYVAPEVLRR NYGKEIDVWS AGVILYILLS GVPPFWAETE KGIFDAILQG 300
  301 EIDFESQPWP SISESAKDLV RKMLTQDPKK RITSAQVLQH PWLRDGEASD KPIDSAVL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.69897
Match: 1a06A
Description: CALMODULIN-DEPENDENT PROTEIN KINASE FROM RAT
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
phosphotransferase activity, alcohol group as acceptor 5.49988294224815 bayes_pls_golite062009
kinase activity 5.3287080791198 bayes_pls_golite062009
protein kinase activity 5.17195961442593 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 4.96052051118534 bayes_pls_golite062009
protein serine/threonine kinase activity 4.46381887831481 bayes_pls_golite062009
calmodulin-dependent protein kinase activity 4.31938467136214 bayes_pls_golite062009
transferase activity 3.97138602499442 bayes_pls_golite062009
binding 2.31930216202447 bayes_pls_golite062009
protein binding 2.276111749106 bayes_pls_golite062009
ATP binding 1.97600611746091 bayes_pls_golite062009
adenyl ribonucleotide binding 1.93596671856664 bayes_pls_golite062009
adenyl nucleotide binding 1.90928021591891 bayes_pls_golite062009
purine ribonucleotide binding 1.65732943334212 bayes_pls_golite062009
ribonucleotide binding 1.65726906484847 bayes_pls_golite062009
purine nucleotide binding 1.63763394711025 bayes_pls_golite062009
nucleotide binding 1.63195828048121 bayes_pls_golite062009
insulin receptor substrate binding 1.62657794525303 bayes_pls_golite062009
protein tyrosine kinase activity 1.3898059094397 bayes_pls_golite062009
receptor signaling protein serine/threonine kinase activity 1.38496328649031 bayes_pls_golite062009
receptor signaling protein activity 1.27291233344322 bayes_pls_golite062009
catalytic activity 1.21655087018101 bayes_pls_golite062009
cytoskeletal protein binding 1.1208666000428 bayes_pls_golite062009
transcription regulator activity 0.829958925072404 bayes_pls_golite062009
nucleic acid binding 0.802851359132363 bayes_pls_golite062009
DNA binding 0.663443092588472 bayes_pls_golite062009
cyclin-dependent protein kinase activity 0.58590430118616 bayes_pls_golite062009
transporter activity 0.553953601841147 bayes_pls_golite062009
tubulin binding 0.488928950975855 bayes_pls_golite062009
protein serine/threonine/tyrosine kinase activity 0.48345772948903 bayes_pls_golite062009
actin binding 0.464111806616899 bayes_pls_golite062009
transcription factor activity 0.434960683214736 bayes_pls_golite062009
MAP kinase activity 0.396857570484422 bayes_pls_golite062009
magnesium ion binding 0.393328812780268 bayes_pls_golite062009
transmembrane transporter activity 0.37676337669549 bayes_pls_golite062009
MAP kinase kinase kinase activity 0.37115026509016 bayes_pls_golite062009
transcription activator activity 0.364700429660116 bayes_pls_golite062009
MAP kinase kinase activity 0.35402045013148 bayes_pls_golite062009
protein complex binding 0.343240719858581 bayes_pls_golite062009
structure-specific DNA binding 0.310604045041543 bayes_pls_golite062009
signal transducer activity 0.270054246024761 bayes_pls_golite062009
molecular transducer activity 0.270054246024761 bayes_pls_golite062009
microtubule binding 0.196718452862042 bayes_pls_golite062009
substrate-specific transporter activity 0.0611721261859464 bayes_pls_golite062009
transmembrane receptor protein kinase activity 0.0556163711947139 bayes_pls_golite062009
transmembrane receptor activity 0.00652065412910241 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [359-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRMKQFRAMN KLKKMALKVI ASNLNEEEIK GLKQMFTNMD TDNSGTITYE ELKAGLAKLG  60
   61 SKLSEAEVKQ LMEAADVDGN GSIDYVEFIT ATMHRHKLER DEHLFKAFQY FDKDNSGFIT 120
  121 RDELESALIE HEMGDTSTIK DIISEVDTDN DGRINYEEFC AMMRGGGMQQ PMRLK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.0
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle