| Protein: | gi|15598540, gi|... |
| Organism: | Pseudomonas aeruginosa PAO1 |
| Length: | 712 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15598540, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [3..710] | [3..713] |
|
|
0.0 | [3..711] | [3..708] |
|
|
0.0 | [3..711] | [3..707] |
|
|
0.0 | [1..712] | [1..711] |
|
|
0.0 | [3..711] | [3..714] |
|
|
0.0 | [3..711] | [3..714] |
|
|
0.0 | [3..711] | [3..706] |
|
|
0.0 | [3..711] | [3..708] |
|
|
0.0 | [3..711] | [3..708] |
|
|
0.0 | [6..706] | [9..714] |
|
Region A: Residues: [1-521] |
1 11 21 31 41 51
| | | | | |
1 MREQALRILK DVFGYDAFRG NQARIIERVA EGGDALVLMP TGGGKSLCFQ VPALLREGLT 60
61 VVVSPLIALM EDQVATLDEL GVPAVALNST LNPEQQRDIA ERLQRGEIKL LYLAPERLVQ 120
121 PRMLAFLQRL PVGLFAIDEA HCVSQWGHDF RPEYLQLGQL AELFPQVPRI ALTATADMRT 180
181 REEMIQRLHL QNAEQFLSSF DRPNIFYRIV PKEQPRKQLL GFLSERRGDA GIVYCLSRKK 240
241 VEEVAEFLGN QGFPALPYHA GLSNELRAHH QKRFLNEEGL IMVATIAFGM GIDKPNVRFV 300
301 AHLDLPKSLE AYYQETGRAG RDGLPADAWM AYGLQDVLLL RQMMQSSEGD ERHKRVERHK 360
361 LEAMLALCEE TRCRRQALLA YFDEEMPQPC GHCDNCVDGV ETWDATESAR QALSAIYRSG 420
421 QRYGVGHLVD ILLGRETEKI RSLGHQHLAV FGIGKGRGED EWRTLFRQLV ARGLADVDLD 480
481 GFGGLRLTEA CRPLLRGEVR LELRRDLKPQ RAKGSSSGGA S
|
| Detection Method: |  |
| Confidence: | 119.0 |
| Match: | 1oywA |
| Description: | Structure of the RecQ Catalytic Core |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA helicase activity | 5.33108843895592 | bayes_pls_golite062009 |
| four-way junction helicase activity | 5.20361383647271 | bayes_pls_golite062009 |
| binding | 2.64537357529343 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 2.16381244011837 | bayes_pls_golite062009 |
| pyrophosphatase activity | 2.13284212711072 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides | 2.11265775498161 | bayes_pls_golite062009 |
| hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 2.11046854230259 | bayes_pls_golite062009 |
| single-stranded DNA-dependent ATPase activity | 1.8195489846634 | bayes_pls_golite062009 |
| helicase activity | 1.70242731830224 | bayes_pls_golite062009 |
| single-stranded DNA-dependent ATP-dependent DNA helicase activity | 1.69315154404254 | bayes_pls_golite062009 |
| hydrolase activity | 1.66122526893602 | bayes_pls_golite062009 |
| ATPase activity | 1.53315090215319 | bayes_pls_golite062009 |
| RNA helicase activity | 1.42791449104435 | bayes_pls_golite062009 |
| nucleic acid binding | 1.41477043612798 | bayes_pls_golite062009 |
| RNA-dependent ATPase activity | 1.39335733374328 | bayes_pls_golite062009 |
| ATP-dependent RNA helicase activity | 1.36724390116598 | bayes_pls_golite062009 |
| microtubule motor activity | 1.30090199952739 | bayes_pls_golite062009 |
| structure-specific DNA binding | 1.2539059700735 | bayes_pls_golite062009 |
| DNA-dependent ATPase activity | 1.2155186842031 | bayes_pls_golite062009 |
| purine NTP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| ATP-dependent helicase activity | 1.19311444180077 | bayes_pls_golite062009 |
| double-stranded DNA binding | 1.117585097627 | bayes_pls_golite062009 |
| DNA binding | 1.11699929651302 | bayes_pls_golite062009 |
| motor activity | 1.03253378953548 | bayes_pls_golite062009 |
| catalytic activity | 1.00104173493322 | bayes_pls_golite062009 |
| transcription regulator activity | 0.989226939888218 | bayes_pls_golite062009 |
| ATP-dependent DNA helicase activity | 0.5886142102548 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.568457189190858 | bayes_pls_golite062009 |
| 0.442119153778711 | bayes_pls_golite062009 | |
| mismatched DNA binding | 0.31144582840038 | bayes_pls_golite062009 |
| microfilament motor activity | 0.2184107989371 | bayes_pls_golite062009 |
| exodeoxyribonuclease V activity | 0.185603938981231 | bayes_pls_golite062009 |
| protein binding | 0.170837278876362 | bayes_pls_golite062009 |
| nucleotide binding | 0.114848452385726 | bayes_pls_golite062009 |
| purine nucleotide binding | 0.10713474095071 | bayes_pls_golite062009 |
| purine ribonucleotide binding | 0.0916519414118148 | bayes_pls_golite062009 |
| ribonucleotide binding | 0.0915913646217636 | bayes_pls_golite062009 |
| transcription factor activity | 0.0434163635422169 | bayes_pls_golite062009 |
| RNA binding | 0.0261282189186349 | bayes_pls_golite062009 |
|
Region A: Residues: [522-605] |
1 11 21 31 41 51
| | | | | |
1 AASQLVRSEE REMWEALRAL RRKLAEEHSV PPYVIFPDAT LLEMLRSQPR SLSDMAQVSG 60
61 VGARKLERYG QAFLDVLTDS PAAP
|
| Detection Method: | |
| Confidence: | 22.30103 |
| Match: | 1wudA |
| Description: | E. coli RecQ HRDC domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [606-712] |
1 11 21 31 41 51
| | | | | |
1 AAPPQDLRHE LASLACAGMT PAQIARQLNC SEKNVYAMLA EAIAGQQVSL EQALDLPEEL 60
61 LGEIQDAFLE EDGELPPVAA LEERFGKRVP SGVLHCVRAA LQVELES
|
| Detection Method: | |
| Confidence: | 1.23 |
| Match: | 1u78A |
| Description: | Structure of the bipartite DNA-binding domain of Tc3 transposase bound to transposon DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.76116210667531 | bayes_pls_golite062009 |
| DNA binding | 3.39628628657785 | bayes_pls_golite062009 |
| DNA helicase activity | 3.24220480567553 | bayes_pls_golite062009 |
| nucleic acid binding | 3.18445899869773 | bayes_pls_golite062009 |
| transcription factor activity | 2.94565986317514 | bayes_pls_golite062009 |
| binding | 2.92574888336072 | bayes_pls_golite062009 |
| transcription repressor activity | 1.86367079595277 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.61721996924599 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.52374123920114 | bayes_pls_golite062009 |
| transcription activator activity | 0.82297417328567 | bayes_pls_golite062009 |
| protein binding | 0.795494287543952 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.559482273209868 | bayes_pls_golite062009 |
| transcription factor binding | 0.525225093153448 | bayes_pls_golite062009 |
| RNA binding | 0.295100304833008 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.289642215056602 | bayes_pls_golite062009 |
| chromatin binding | 0.18079392911406 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.177911729650997 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.149569950337217 | bayes_pls_golite062009 |
| double-stranded DNA binding | 0.0110175210304684 | bayes_pls_golite062009 |
