YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256920, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	503 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256920, gi|....

Description	E-value	Query Range	Subject Range
gi\|42737300, gi\|... - gi\|42781378\|ref\|NP_978625.1\| glycine betaine/L-proline ABC transporter, permease protein, putative [...	0.0	[1..503]	[1..503]
gi\|228632996, gi... - gi\|229150503\|ref\|ZP_04278719.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|218160565, gi... - gi\|218232608\|ref\|YP_002366980.1\| glycine betaine/L-proline ABC transporter, permease and substrate-b... gi\|229044025, gi... - gi\|229044025\|ref\|ZP_04191714.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|228958548, gi... - gi\|228958548\|ref\|ZP_04120268.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|228807087, gi... - gi\|228952621\|ref\|ZP_04114697.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|228638595, gi... - gi\|229144873\|ref\|ZP_04273270.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|229127677, gi... - gi\|229127677\|ref\|ZP_04256666.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|30020367, gi\|... - gi\|30020367\|ref\|NP_831998.1\| glycine betaine transport system permease protein / glycine betaine-bin... gi\|229109720, gi... - gi\|229109720\|ref\|ZP_04239306.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|229079450, gi... - gi\|229079450\|ref\|ZP_04211990.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/...	0.0	[1..503]	[1..503]
gi\|47557274, gi\|... - gi\|47565638\|ref\|ZP_00236678.1\| MW0685 [Bacillus cereus G9241], gi\|47557274\|gb\|EAL15602.1\| MW0685 [Ba...	0.0	[1..503]	[1..503]
gi\|89205566, gi\|... - gi\|89205566\|ref\|ZP_01184135.1\| Binding-protein-dependent transport systems inner membrane component:...	0.0	[1..503]	[1..503]
gi\|195993503, gi... - gi\|196033823\|ref\|ZP_03101234.1\| glycine betaine/L-proline ABC transporter, permease and substrate-bi... gi\|229121836, gi... - gi\|229121836\|ref\|ZP_04251056.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|228692038, gi... - gi\|229091272\|ref\|ZP_04222490.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|49477588, gi\|... - gi\|49477588\|ref\|YP_036392.1\| glycine betaine/choline ABC transporter, ATP-binding protein [Bacillus ... gi\|228813776, gi... - gi\|228945902\|ref\|ZP_04108245.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/... gi\|228927351, gi... - gi\|228927351\|ref\|ZP_04090408.1\| Glycine betaine/L-proline ABC transporter, permease/glycine betaine/...	0.0	[1..503]	[1..503]
gi\|52143178, gi\|... - gi\|52143178\|ref\|YP_083652.1\| glycine betaine/choline ABC transporter, ATP-binding protein [Bacillus ...	0.0	[1..503]	[1..503]
gi\|72495820, gi\|... - gi\|73663305\|ref\|YP_302086.1\| putative periplasmic glycine betaine choline-binding protein of an ABC-...	0.0	[1..503]	[1..504]
gi\|251810154, gi... - gi\|251810154\|ref\|ZP_04824627.1\| glycine betaine/carnitine/choline ABC superfamily ATP binding casset... gi\|57636979, gi\|... - gi\|57866321\|ref\|YP_187980.1\| ABC transporter, permease protein [Staphylococcus epidermidis RP62A], g... gi\|27467421, gi\|... - gi\|27467421\|ref\|NP_764058.1\| choline transporter [Staphylococcus epidermidis ATCC 12228], gi\|2731496...	0.0	[1..503]	[1..504]
gi\|221139325 - gi\|221139325\|ref\|ZP_03564125.1\| glycine betaine/carnitine/choline ABC transporter membrane protein [... gi\|160367796, gi... - gi\|161508987\|ref\|YP_001574646.1\| glycine betaine/carnitine/choline ABC transporter membrane protein ... gi\|90582483, gi\|... - gi\|90582483\|ref\|ZP_01238246.1\| Binding-protein-dependent transport systems inner membrane component:... gi\|147740251, gi... - gi\|90585268\|ref\|ZP_01240978.1\| Binding-protein-dependent transport systems inner membrane component:... gi\|221140938 - gi\|221140938\|ref\|ZP_03565431.1\| glycine betaine/carnitine/choline ABC transporter membrane protein [... gi\|87162224\|ref\|... - osmoprotectant ABC transporter, permease [Staphylococcus aureus subsp. aureus USA300], osmoprotectan... gi\|57651559, gi\|... - gi\|57651559\|ref\|YP_185657.1\| osmoprotectant ABC transporter, permease protein [Staphylococcus aureus... gi\|88194497, gi\|... - gi\|88194497\|ref\|YP_499292.1\| amino acid ABC transporter, permease protein, putative [Staphylococcus ... gi\|87128198, gi\|... - gi\|87162224\|ref\|YP_493410.1\| osmoprotectant ABC transporter, permease [Staphylococcus aureus subsp. ... gi\|269202342\|ref... - osmoprotectant ABC transporter, permease protein [Staphylococcus aureus subsp. aureus ED98] gi\|82655956, gi\|... - gi\|82750425\|ref\|YP_416166.1\| glycine betaine/carnitine/choline ATP-binding ABC transport protein [St... gi\|151220903, gi... - gi\|151220903\|ref\|YP_001331725.1\| ABC transporter permease protein [Staphylococcus aureus subsp. aure... gi\|251813690, gi... - gi\|251813690\|ref\|ZP_04828163.1\| glycine betaine/carnitine/choline ABC superfamily ATP binding casset... gi\|253315360 - gi\|253315360\|ref\|ZP_04838573.1\| osmoprotectant ABC transporter, permease [Staphylococcus aureus subs... gi\|253731346, gi... - gi\|253731346\|ref\|ZP_04865511.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|253729198, gi... - gi\|253732833\|ref\|ZP_04866998.1\| ABC superfamily ATP binding cassette transporter, membrane protein [... gi\|255005514 - gi\|255005514\|ref\|ZP_05144115.2\| osmoprotectant ABC transporter, permease [Staphylococcus aureus subs... gi\|15923713, gi\|... - gi\|15923713\|ref\|NP_371247.1\| choline transporter [Staphylococcus aureus subsp. aureus Mu50], gi\|1424... gi\|13700614, gi\|... - gi\|15926400\|ref\|NP_373933.1\| hypothetical protein SA0678 [Staphylococcus aureus subsp. aureus N315],... gi\|21282414, gi\|... - gi\|21282414\|ref\|NP_645502.1\| hypothetical protein MW0685 [Staphylococcus aureus subsp. aureus MW2], ... gi\|49244038, gi\|... - gi\|49485595\|ref\|YP_042816.1\| ABC transporter permease protein [Staphylococcus aureus subsp. aureus M... gi\|25506728 - pir\|\|D89844 hypothetical protein SA0678 [imported] - Staphylococcus aureus (strain N315) gi\|156721186, gi... - gi\|156979051\|ref\|YP_001441310.1\| hypothetical protein SAHV_0720 [Staphylococcus aureus subsp. aureus...	0.0	[1..503]	[1..504]
gi\|49241108, gi\|... - gi\|49482979\|ref\|YP_040203.1\| ABC transporter permease protein [Staphylococcus aureus subsp. aureus M... gi\|227557188, gi... - gi\|227557188\|ref\|ZP_03987235.1\| glycine betaine/carnitine/choline ABC superfamily ATP binding casset... gi\|227852446, gi... - gi\|227899280\|ref\|ZP_04017085.1\| glycine betaine/carnitine/choline ABC superfamily ATP binding casset...	0.0	[1..503]	[1..504]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDFIQTFQE RKIELLTALS EHLQISLISL FFAVIIAVPL GILLTRKERM AELIIGTSAV  60
   61 MQTVPSLALL GLLIPLVGIG KIPAVIALVV YALLPILRNT YTGIRELDES LIEAAKAMGM 120
  121 NSWRRLWKVE LPLALPIIMA GIRTAMVLIV GTATLAALIG AGGLGKLILL GIDRNDHALI 180
  181 ILGAVPAALL ALFFDVVLRV LEKPKRSSKR VIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	2onkC
Description:	No description for 2onkC was found.

Predicted functions:

Term	Confidence	Notes
substrate-specific transmembrane transporter activity	3.90877533326679	bayes_pls_golite062009
ion transmembrane transporter activity	3.04751896510563	bayes_pls_golite062009
transporter activity	2.92901170384371	bayes_pls_golite062009
transmembrane transporter activity	2.82231503501622	bayes_pls_golite062009
active transmembrane transporter activity	2.62912035749387	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	2.58567076459772	bayes_pls_golite062009
primary active transmembrane transporter activity	2.58112472232827	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	2.57722913421807	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	2.57722913421807	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	2.57687258170314	bayes_pls_golite062009
cation transmembrane transporter activity	2.28111291142378	bayes_pls_golite062009
ATPase activity, coupled	2.26533438516544	bayes_pls_golite062009
ATPase activity	2.12523930663356	bayes_pls_golite062009
substrate-specific transporter activity	2.08705004234574	bayes_pls_golite062009
nucleoside-triphosphatase activity	2.06571106810861	bayes_pls_golite062009
pyrophosphatase activity	2.02843508794757	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	2.01869168199434	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	2.01800287925825	bayes_pls_golite062009
hydrolase activity	1.27489880499396	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	0.86861612741394	bayes_pls_golite062009
catalytic activity	0.79821499476005	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	0.689648105332081	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	0.67740655647842	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	0.56369901852468	bayes_pls_golite062009
amine transmembrane transporter activity	0.525383483850367	bayes_pls_golite062009
anion transmembrane transporter activity	0.52374242151885	bayes_pls_golite062009
sugar transmembrane transporter activity	0.44915416750675	bayes_pls_golite062009
amino acid transmembrane transporter activity	0.110419368036337	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [214-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TICIVCIMVA SPFLWNTEKK DIVIAGKLGS EPEILIQMYK QLIEQDTDLH VQLKPGLGKT  60
   61 AFVFEALKSG EVDIYPEFSG TALSTFVKEE PKSTNRDEVY EQARVGMEKK YNMVMLKPME 120
  121 YNNTYALAMP KKIADQNNIN TISDLGNIAQ DTKVGFTLEF ADREDGYKGM QKLYNYKFSN 180
  181 VKTMEPKLRY SAIQSGDVNV IDAYSTDSEL EQYGLKALKD DKGLFPPYQG APLLRKETLQ 240
  241 KYPELEKVLN KLSGKITDEE MRKMNYEVNV NGKNSEEVAK QFLQKENLLR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1sw2A
Description:	Crystal structure of ProX from Archeoglobus fulgidus in complex with glycine betaine
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
amine transmembrane transporter activity	2.8505643526173	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.80786841862036	bayes_pls_golite062009
transporter activity	2.37767937786605	bayes_pls_golite062009
ion transmembrane transporter activity	2.19564149972908	bayes_pls_golite062009
transmembrane transporter activity	2.14027396604232	bayes_pls_golite062009
active transmembrane transporter activity	1.98824826924235	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	1.92247368464925	bayes_pls_golite062009
primary active transmembrane transporter activity	1.91778402126342	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	1.91458600392598	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.91458600392598	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	1.91424996753266	bayes_pls_golite062009
amino acid transmembrane transporter activity	1.88446253507704	bayes_pls_golite062009
carboxylic acid transmembrane transporter activity	1.68289701302071	bayes_pls_golite062009
organic acid transmembrane transporter activity	1.65555448677681	bayes_pls_golite062009
ATPase activity, coupled	1.59154512845516	bayes_pls_golite062009
substrate-specific transporter activity	1.51716707550629	bayes_pls_golite062009
ATPase activity	1.44327228942016	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.36989838880058	bayes_pls_golite062009
pyrophosphatase activity	1.33033652028872	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.31993399326424	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.31926578892427	bayes_pls_golite062009
amine-transporting ATPase activity	1.26059419028501	bayes_pls_golite062009
amino acid-transporting ATPase activity	1.25084210844339	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.06410714245	bayes_pls_golite062009
inorganic anion transmembrane transporter activity	1.06102061998642	bayes_pls_golite062009
anion transmembrane-transporting ATPase activity	0.919969356414241	bayes_pls_golite062009
anion transmembrane transporter activity	0.89537702998218	bayes_pls_golite062009
binding	0.841985743602294	bayes_pls_golite062009
polyamine transmembrane transporter activity	0.82443378583023	bayes_pls_golite062009
cation transmembrane transporter activity	0.799357659531325	bayes_pls_golite062009
polyamine-transporting ATPase activity	0.605434747769831	bayes_pls_golite062009
hydrolase activity	0.52200036125335	bayes_pls_golite062009
amine binding	0.48583609326514	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.301206065600289	bayes_pls_golite062009
catalytic activity	0.278324746769832	bayes_pls_golite062009
quaternary-ammonium-compound-transporting ATPase activity	0.276782479687659	bayes_pls_golite062009
metal ion transmembrane transporter activity	0.202264690255979	bayes_pls_golite062009
amino acid binding	0.0252217029836901	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: