YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30256828, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	1033 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30256828, gi|....

Description	E-value	Query Range	Subject Range
gi\|47570085, gi\|... - gi\|47570085\|ref\|ZP_00240744.1\| isoleucyl-tRNA synthetase [Bacillus cereus G9241], gi\|47553246\|gb\|EAL...	0.0	[1..1032]	[1..1032]
SYI2_BACCZ - Isoleucine--tRNA ligase 2 OS=Bacillus cereus (strain ZK / E33L) GN=ileS2 PE=3 SV=1	0.0	[1..1033]	[1..1033]
SYI2_BACHK - Isoleucine--tRNA ligase 2 OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=ileS2 PE=3 SV... SYI2_BACHK - Isoleucyl-tRNA synthetase 2 OS=Bacillus thuringiensis subsp. konkukian GN=ileS2 PE=3 SV=1	0.0	[1..1033]	[1..1033]
SYI2_BACCR - Isoleucine--tRNA ligase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... gi\|228655685, gi... - gi\|229127608\|ref\|ZP_04256597.1\| Isoleucyl-tRNA synthetase 2 [Bacillus cereus BDRD-Cer4], gi\|22865568...	0.0	[1..1032]	[1..1032]
gi\|65319480, gi\|... - gi\|65319480\|ref\|ZP_00392439.1\| COG0060: Isoleucyl-tRNA synthetase [Bacillus anthracis str. A2012], r...	0.0	[1..1033]	[1..1033]
gi\|75760445, gi\|... - gi\|75760445\|ref\|ZP_00740486.1\| Isoleucyl-tRNA synthetase, mupirocin resistant [Bacillus thuringiensi...	0.0	[1..1032]	[1..1032]
SYI2_BACC1 - Isoleucine--tRNA ligase 2 OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=ileS2 PE=3 SV=1	0.0	[1..1033]	[1..1033]
gi\|163939986, gi... - gi\|89208439\|ref\|ZP_01186946.1\| Isoleucyl-tRNA synthetase, class Ia [Bacillus weihenstephanensis KBAB...	0.0	[1..1029]	[1..1029]
SYI_METTH - Isoleucine--tRNA ligase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JC... gi\|7437550 - pir\|\|H69049 isoleucine-tRNA ligase (EC 6.1.1.5) - Methanobacterium thermoautotrophicum (strain Delta...	0.0	[1..1033]	[3..1043]

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Predicted Domain #1

Region A:
Residues: [1-811]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVDVKESA VGREMRIRKQ WNEQNIFEQS IQNREGAQSF VFYEGPPTAN GLPHVGHALG  60
   61 RTIKDVVARY KTMAGYKVLR KAGWDTHGLP VELGVEKQLG ISGKHEIEEY GIEPFIKKCK 120
  121 ESVFTYEKQW REFTESIGYW VDMDDPYVTL ENPYIESVWH ILGTIHEKGL LYKGHRVSPY 180
  181 CPSCQTSLSS HEVAQGYKTV KDLSATVKFK VKDSENEYFL GWTTTPWTLP ANVALAVHPN 240
  241 MEYVKAKQEG HVYIVAKERV QDVLKENYEV LSVHKGEELL NISYTAPFPM KEVTNGYRVI 300
  301 GADFVTADSG TGLVHIAPAY GEDDYRVVQS EGLSFLHVVD EKGEYTEAVP FLKGKFVKDC 360
  361 DVDIVRYLAK EDLLYHKEKY EHSYPHCWRC DSPLLYYAGE SWLIRTTAIK DTFLQNNDTV 420
  421 TWYPDHMKHG RFGKFLENMV DWNISRNRYW GTPLNVWECE RCDHQFAPKS IADLRKHSMK 480
  481 ETPEDLELHK PYVDEVQVCC EKCGSTMNRT PEVIDVWFDS GSMPFAQYHY PFENKELFEE 540
  541 QFPADVIAEG IDQTRGWFYS LLAVSALYTG KVPYKRVLSL GHVLDEEGQK MSKSKGNALD 600
  601 PVDLVGKFGA DALRWALLVD SALWNAKRFS ERTVLEAKSK FVDTLVNVYS FYVLYANLDE 660
  661 YNPNETYDVK RTKLDEWVLS RLHSTTKKVR TALDDYQFTN AAREIAALVD EVSNWYVRRS 720
  721 RNRFWESGMN AEKAAAYETL HDVLVTISKL IAPFTPFVAE DVHLNLTGSS VHLEDYPVVN 780
  781 ESLLQPKLEA EMDAVLQVVE LGRSNRNQHS L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ileA
Description:	ISOLEUCYL-TRNA SYNTHETASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming aminoacyl-tRNA and related compounds	7.16276509815667	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	7.16276509815667	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.13957775963187	bayes_pls_golite062009
valine-tRNA ligase activity	7.13767629265822	bayes_pls_golite062009
leucine-tRNA ligase activity	7.03538514482698	bayes_pls_golite062009
isoleucine-tRNA ligase activity	6.38633897147986	bayes_pls_golite062009
ligase activity	6.11211476973434	bayes_pls_golite062009
glutamate-tRNA ligase activity	2.63681738794687	bayes_pls_golite062009
catalytic activity	2.37674226834122	bayes_pls_golite062009
methionine-tRNA ligase activity	2.01261843164558	bayes_pls_golite062009
tyrosine-tRNA ligase activity	1.88984817882585	bayes_pls_golite062009
tryptophan-tRNA ligase activity	1.14187887833901	bayes_pls_golite062009
arginine-tRNA ligase activity	1.13743634264647	bayes_pls_golite062009
cysteine-tRNA ligase activity	0.844943947059557	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.625793556381714	bayes_pls_golite062009
binding	0.27454602748467	bayes_pls_golite062009
nucleotidyltransferase activity	0.2293846471193	bayes_pls_golite062009
nucleic acid binding	0.161799496958314	bayes_pls_golite062009
glutamine-tRNA ligase activity	0.118292082006187	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [812-925]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KVKQPLAELV LLEHNENDMD WESYRDIVMD ELNVKAFHVE LDETKYTSYQ LKLNFKKAGP  60
   61 KFGKNVNAVN GWLKQLSQDE VQNFVSTERA VYEVAPGEEI VVTTEDVLVE KVAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1rqgA
Description:	Methionyl-tRNA synthetase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [926-1033]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGFSNTTNGQ YTVMLDTNVT EELLQEGVAR EFIRAVQEYR KQLNLPVNLR VDVILDTEEE  60
   61 LQQTLTNHKE LLEENLLVKQ FTFGHLTNED DELSLGETKV RIKLSTAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	1xmtA
Description:	X-RAY STRUCTURE OF GENE PRODUCT FROM ARABIDOPSIS THALIANA AT1G77540
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity	2.11244007360413	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.94638590323545	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	1.83027840181539	bayes_pls_golite062009
catalytic activity	1.823104805379	bayes_pls_golite062009
acyltransferase activity	1.79975330506106	bayes_pls_golite062009
acetyltransferase activity	0.982158175405503	bayes_pls_golite062009
N-acyltransferase activity	0.95277111277247	bayes_pls_golite062009
binding	0.465197530725468	bayes_pls_golite062009
nucleic acid binding	0.255991112435493	bayes_pls_golite062009
transcription regulator activity	0.11900800706558	bayes_pls_golite062009
protein binding	0.0165329419157162	bayes_pls_golite062009
histone acetyltransferase activity	0.00126652056286969	bayes_pls_golite062009
lysine N-acetyltransferase activity	0.00126652056286969	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: